Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00124 ATGTTTGATTCTCACCATCATGTGCTTGATATGTCGTCTCACATGTACAAGACTTCCTCTGAGAGTGATTTGGGAAGGGCCATAGATGAAGACTACGAGAGCAAATCTTGCACAGAGACCACGGACGCTCCTTTCAGTGATGACAAGGATCCTAACCAAGGACCCACAAAGAAGGGCTACCACCGCCACACACAGCGCCAAATACAAGAAATGGAAGCCTTCTTTAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAACCTTTGCAAATCAAGTTTTGGTTCCAAAACAAACGCACCCAGATGAAGGCTCAACATGAACGACATGAGAATTCTAATTTGAAGGCTGAGAATGAAAAACTTCATGCTGAGAACAATAGGTACAAGGAGGCCCTAAGTAATGCTACATGCCCCAAGTGCGGAGGCCCAGTTGCTCTTGGTGAAATGTCCTTTGACGAGCAGCACTTGAGGATTGAGAATGCTCGATTAAGAGAAGAGATTGATAGAATTTCATCTCACAGTAACAATCATGTGCCTTCCCGCTCGCTTGATCTTGGTGTTGGAGCACAGTCAAGCATGGTAGGAGAAATGTATGGTGGTAGTGACCTTCTTAGGTCACTCCCAGTTCCTGCTGATGCTGACAAACCCATGATTGTTGAGCTTGCCGTTGCAGCAATGGAGGAACTAACAAGATTAGCTCAGGCTGGCGACCCTTTATGGGTCCCCAGCAACCACATTACTGAGATTCTAAATGAAGATGAATACTTGAGGACTTTCCCTAGACGTATAGGTCCGAAACCATTGGGCTTAAGATCTGAAGCTTCAAGGGAATCCGTGGTGGTTATCATGAATCATATCAACCTTGTTGATATCTTTATGGATGTGAATAAATGGTCAACTGCGTTTTGCGGAATAGTTTCAAGAGCATTCACACTTGAAGTCCTTTCAACTGGAGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCACTTGTTCCTACTCGTGAGAACTATTTTGTAAGGTACTGTAAGCAGCATCCAGATGGGATATGGGCGGTGGTTGATGTTTCCTTGGATAATCTGCGACCAAGTACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGTTGTTTAATTCAACAATTGCCAAATGGTTACTCCAAGGTTACATGGATTGAACATGTAGAAGTGGATAATAGAGCGGTGCATGATCTATATAGACCTTTAGTTAATTCGAGCATTGCCTTTGGAGCTAAACGATGGGTGGCTACATTAGATAGACAATGCGAACGTCTTGCTAGTTCAATGGCCAGCATAGTACCATCAGGGGTCCTTTGTGTGATAATCAGTCCTGAGGGAAAGGAACGTATGCTGAAGCTGACAGAGAGAATGGTAATGAGCTTTTGTGCTGGTGTTGGTGCTTCTACAGCACATGTTTGGACAACGCTATCAGAAACAGGATGTGATGATGTAAGGGTCATGACCAGAAAGAGTATGGATGACCCAGGCAGTCCCCCCGGTATAGTGCTCTGTGCTGCTACTTCTTTCTGGCTTCCAGTTCCTCCAAACAGGGTTTTTGATTTCCTTCGAGATCAAAACTCAAGAAGTGAGTGGGATATTCTCTCCAACGGGGGCCAAGTTCAGGAATTGGCACACATAGAAAATGGTGGTGATCCAGGCAACTGTGTCTCTTTACTTCGTGTCAAAAGTGCAAATTCCAACCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTGTACTGGCTCATATGTAGTTTATGCTCCTGTCGATGTTGTTACCATGAATGTAGTATTGAATGGTGCGGATCCAGATTATGTTGCCCTGTTGCCATCAGGCTTTGCTATTCTTCCTGATGGGCCTGGATCAAACGAAGGACCAATACTTGATGTTGGATCTGGTGGTTCTCTACTCACTGTTGCATTTCAGATATTAGTTGATTCAGTTCCAACGGCAAAGCTATCTCTAGGTTCAGTGGCCACCGTTAACAGTTTAATTAAGTGCACAGTTGAAAAGATCAAAGTCGCAGTGATAAACGAGGGCACCTGA 2124 0.4477 MFDSHHHVLDMSSHMYKTSSESDLGRAIDEDYESKSCTETTDAPFSDDKDPNQGPTKKGYHRHTQRQIQEMEAFFKQCPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKAQHERHENSNLKAENEKLHAENNRYKEALSNATCPKCGGPVALGEMSFDEQHLRIENARLREEIDRISSHSNNHVPSRSLDLGVGAQSSMVGEMYGGSDLLRSLPVPADADKPMIVELAVAAMEELTRLAQAGDPLWVPSNHITEILNEDEYLRTFPRRIGPKPLGLRSEASRESVVVIMNHINLVDIFMDVNKWSTAFCGIVSRAFTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQQLPNGYSKVTWIEHVEVDNRAVHDLYRPLVNSSIAFGAKRWVATLDRQCERLASSMASIVPSGVLCVIISPEGKERMLKLTERMVMSFCAGVGASTAHVWTTLSETGCDDVRVMTRKSMDDPGSPPGIVLCAATSFWLPVPPNRVFDFLRDQNSRSEWDILSNGGQVQELAHIENGGDPGNCVSLLRVKSANSNQSNMLILQESCTDCTGSYVVYAPVDVVTMNVVLNGADPDYVALLPSGFAILPDGPGSNEGPILDVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVEKIKVAVINEGT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00124 707 ProSiteProfiles START domain profile. 220 451 IPR002913 GO:0008289
Gabi1257g00124 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 702 IPR042160 -
Gabi1257g00124 707 MobiDBLite consensus disorder prediction 33 64 - -
Gabi1257g00124 707 Pfam START domain 230 448 IPR002913 GO:0008289
Gabi1257g00124 707 Gene3D - 285 450 IPR023393 -
Gabi1257g00124 707 SMART HOX_1 56 118 IPR001356 GO:0003677
Gabi1257g00124 707 SUPERFAMILY Bet v1-like 468 695 - -
Gabi1257g00124 707 SUPERFAMILY Homeodomain-like 50 120 IPR009057 -
Gabi1257g00124 707 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Gabi1257g00124 707 SMART START_1 229 448 IPR002913 GO:0008289
Gabi1257g00124 707 FunFam Homeobox-leucine zipper protein HDG1 45 130 - -
Gabi1257g00124 707 Pfam Homeodomain 57 112 IPR001356 GO:0003677
Gabi1257g00124 707 SUPERFAMILY Bet v1-like 221 450 - -
Gabi1257g00124 707 Coils Coil 106 143 - -
Gabi1257g00124 707 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Gabi1257g00124 707 Gene3D - 45 131 - -
Gabi1257g00124 707 FunFam Homeobox-leucine zipper protein GLABRA 2 229 447 - -
Gabi1257g00124 707 CDD homeodomain 57 115 IPR001356 GO:0003677
Gabi1257g00124 707 CDD START_ArGLABRA2_like 224 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00124 Gabi-Chr1257 1078151 1081809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00124 1 706 Homeobox Transcription Factor Family AT4G21750 72.763 0.0 1114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1257g00124 START 1.6e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00124 K09338 - gmx:100782240 1166.76