Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00121 ATGGCTCCCCAAGAATCTCTGCTACACAAACCTAGAAAACCCCTTTCCAAAACATTCTGGTTAATCCTCTCGGTAGCAGCTGTCCTAAGCTCAACAGCCCTTATTGCTTCTTATCTCATCAAACCCACCTCCTTGCTTCACCACCATGTCTGTGAACATGCAATAGACACAACATCCTGCTTAGCACATGTCTCAGAAGTAGCTCAAGGTCAAATCTTGACCACCACAAAATACCAAAAATTCAATTTACTCAAATCCTTCCTAATGAAGTCCACTTCACACATTCAGAAAGCTATGGACACAGCCAAAGCTATCAAACTCAGGACTAACAGTCCGAGGGAGAAAGCAGCTTTGCATGACTGTGAGCAGCTTATGGACATGTCCATGGATAGAGTTTGGGACTCTATGATGGCTCTAACAAAAGAGACCACTGCTTCGCTGCAAGATGCACACTCATGGCTAAGCGGTGTGCTCACAAACCATGTCACTTGCATGGATGAGTTAGAGGGGTCAGCTAGGGCCCTGATGGAGGCTGAGCTCGAGAACTTGATATCCAGAGCGAGAACCTCTCTGGCCTTGCTTGTTGCGGTTTTGCCTCAAAATCCAAAGGGTGAACAACTCATTGATGAACCATTAAATGGAAACTTTCCTTCGTGGGTGACAAGTAAAGCTCGGAGGCTTTTGGAGTCTTCGGCTGGGGGTGTCGAGGCCAATGTTGTGGTAGCTAAGGATGGAAGCGGCAAGTTCAAGACAGTGGCTGAGGCTGTGGCATCCGTACCCGACAATGGTAAGACAAGGTACGTTATCTATGTGAAAAAGGGAACGTACAAAGAGAATGTTGATATTGGTAAGACGAAGAAGAATGTGATGCTAGTGGGGGATGGCATGGATGCAACAATTATCACCGGCAACTTGAATTATGTGGATGGAACAGGCACCTTTCGCACTGCCACTGTTGCTGCGAATGGTGATGGGTTTATAGCCCAGGACATGTGGTTCCAAAACACAGCAGGCCCAGTGAAGCACCAGGCAGTGGCTTTGCGCGTGAGCGCTGATCAATCGGTGATAAATCGCTGCTGCATTGACGCCTATCAAGACACTCTCTACGCTCACAGCTTGAGGCAATTCTACCGTGACTCCTTCATCACCGGCACCATTGACTTCATCTTTGGAGACGCATCCGTTGTGTTCCAGAACTGCAACCTGGTGGCCCGAAAGCCCATGAGTAAACAGAGCAACATGGTCACGGCCCAAGGACGAGTAGATCCAAACCAAAATTCAGGAACTTCGATTCAGCAATGTCAACTAACATCAAGCTCGGATCTCAAGCCCGTCGTGGGTCCCGTTAAAACTTATCTAGGCCGCCCATGGCAGAATTACTCGAGAACCGTTGTGATGCAGTCTTCAATAGATAGCCATATCGACCCAGCAGGATGGTCTCCATGGAATGATGCCAGTAGCAGCTTTTTGACAACGTTGTATTATGGAGAGTATATGAACAGTGGTCCAGGTGCTGGTACCAGCAAAAGAGTGAATTGGCCTGGTTACCATGTCATTACAAGTGCTGCCGAGGCTAGCAAGTTCACAGTAACGCAGCTCATCCAAGGTAATGTTTGGTTGAAGAACACTGGTGTCACCTTCATTGAGGGCCTCTAG 1656 0.4795 MAPQESLLHKPRKPLSKTFWLILSVAAVLSSTALIASYLIKPTSLLHHHVCEHAIDTTSCLAHVSEVAQGQILTTTKYQKFNLLKSFLMKSTSHIQKAMDTAKAIKLRTNSPREKAALHDCEQLMDMSMDRVWDSMMALTKETTASLQDAHSWLSGVLTNHVTCMDELEGSARALMEAELENLISRARTSLALLVAVLPQNPKGEQLIDEPLNGNFPSWVTSKARRLLESSAGGVEANVVVAKDGSGKFKTVAEAVASVPDNGKTRYVIYVKKGTYKENVDIGKTKKNVMLVGDGMDATIITGNLNYVDGTGTFRTATVAANGDGFIAQDMWFQNTAGPVKHQAVALRVSADQSVINRCCIDAYQDTLYAHSLRQFYRDSFITGTIDFIFGDASVVFQNCNLVARKPMSKQSNMVTAQGRVDPNQNSGTSIQQCQLTSSSDLKPVVGPVKTYLGRPWQNYSRTVVMQSSIDSHIDPAGWSPWNDASSSFLTTLYYGEYMNSGPGAGTSKRVNWPGYHVITSAAEASKFTVTQLIQGNVWLKNTGVTFIEGL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00121 551 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Gabi1257g00121 551 CDD PMEI-like_4 53 197 - -
Gabi1257g00121 551 PANTHER PECTINESTERASE 28 541 - -
Gabi1257g00121 551 SUPERFAMILY Pectin lyase-like 235 550 IPR011050 -
Gabi1257g00121 551 SMART PMEI_2 41 193 IPR006501 GO:0004857
Gabi1257g00121 551 Pfam Pectinesterase 238 537 IPR000070 GO:0030599|GO:0042545
Gabi1257g00121 551 Gene3D - 233 551 IPR012334 -
Gabi1257g00121 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 197 IPR035513 -
Gabi1257g00121 551 Pfam Plant invertase/pectin methylesterase inhibitor 48 187 IPR006501 GO:0004857
Gabi1257g00121 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 193 IPR035513 -
Gabi1257g00121 551 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Gabi1257g00121 551 FunFam Pectinesterase 3 48 197 - -
Gabi1257g00121 551 NCBIfam pectinesterase inhibitor domain 24 173 IPR006501 GO:0004857
Gabi1257g00121 551 FunFam Pectinesterase 232 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00121 Gabi-Chr1257 1051002 1053193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00121 5 551 Carbohydrate Esterase AT1G11580 55.971 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00121 K01051 - gmx:100815836 848.966