Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00120 ATGGCTACCCAAGAATCTCTGCTGCACAAACCTAGAACACCCCTTTCCAAAACATTCTGGTTAATCCTCTCTGTGGCTGCTGTCCTAAGCTCATCAGCCCTTATTGCTTCTTATCTCATCAAACCCACCTCCTTGCGTCACCACCATGTCTGTGAACATGCAATAGACACAACATCCTGCTTAGCACATGTCTCAGAAGTAGTTCAAGGTCAAATCTTGACCACCACAAAATACCAAAAATTCAATTTACTCAAATCCTTCCTAATGAAGTCCACTTCACACATTCAGAAAGCTATGGACACAGCCAACGCTATCAAACTCAGGACTAACAGTAGTCCGAGGGAGAAAGCAGCTTTGCATGACTGTGAGCAGCTTATGGACATGTCCATGGATAGAGTTTGGGACTCTATGATGGCTCTAACAAAAGAGACCACTGGTTCGCTGCAAGATGCACACTCATGGCTAAGCGGCGTGCTCACAAACCATGTCACTTGCGTGGATGGGTTAGAAGGGTCAGCTAGGGCCCTGATGGAGGCTGAGCTCGAGGACTTGATATCCAGAGCAAGAACCTCTCTGGCCTTGCTTGTTGCGGTTTTGCCTCCAAATCCAAAGGGTGAAGTGCAACTCATTGATGAACCATTAAATGGGAACTTTCCTTCGTGGGTAACAAGTAAGGATCGGAGGCTTTTAGGGTCTTCGGTCGGGGATATCAAGGCCAATGTTGTGGTGGCTAAAGATGGAAGCGGCAAGTTCAAGACAGTGGCTGAGGCTGTGGCATCCGCACCCGACAATGGTAAGACAAGGTACGTTATCTATGTGAAGAAGGGAACGTACAAAGAGAATGTTGATATTGGTAAGAAGAAGAAGAATGTGATGCTGGTGGGGGATGGCATGGATGCAACAGTAATCACCGGCAGCTTGAATTTTGTCGATGGAACTGGCACCTTTAAAACTGCCACTGTTGCTGCAAATGGTGATGGGTTTATAGCCCAAGATATGTGCTTTCAAAACACAGCAGGCCCAGTGAAGCACCAGGCAGTGGCTCTGCGCGTGAGCGCAGACCAATCGGTGATAAACCGTTGCCGCATTGACGCCTATCAAGACACTCTCTATGCTCACAGCTTGAGGCAGTTCTACCGTGACTCCTTCATCACCGGCACCGTTGACTTCATCTTTGGAGACGCATCTGTTGTGTTCCAGAACTGCAAGCTGGAGGCCCGAAAGCCCATGAGTAACCAGAACAACATGGTTACAGCCCAAGGACGAGTAGATCCAAACCAGAATACAGGAACTTCAATTCAGCAATGTCAACTAACACCAAGCTCGGATCTCAAGCCCGTCGTGGGTTCCGTTAAAACTTATCTGGGCCGCCCATGGAAGAAATACTCAAGAACTGTTGTGATGCAGTCGTCACTTGACAGCCATATCGACCCAACAGGATGGTCTCCTTGGGATGATGCCAGTAGCGATTTTTTGAAAACGTTGTATTATGGAGAATACATGAACAGTGGGCCAGGTGCTGGTACCAGCAAGAGAGTAAAATGGCCTGGTTACCATGTCATTACAAGTGCTGCCGAGGCTAGCAAGTTCACAGTAACGCAACTCATACAAGGTAATGTTTGGTTGAAGAACACTGGTGTCACCTTCACTGAGGGCCTCTAG 1662 0.4789 MATQESLLHKPRTPLSKTFWLILSVAAVLSSSALIASYLIKPTSLRHHHVCEHAIDTTSCLAHVSEVVQGQILTTTKYQKFNLLKSFLMKSTSHIQKAMDTANAIKLRTNSSPREKAALHDCEQLMDMSMDRVWDSMMALTKETTGSLQDAHSWLSGVLTNHVTCVDGLEGSARALMEAELEDLISRARTSLALLVAVLPPNPKGEVQLIDEPLNGNFPSWVTSKDRRLLGSSVGDIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVDIGKKKKNVMLVGDGMDATVITGSLNFVDGTGTFKTATVAANGDGFIAQDMCFQNTAGPVKHQAVALRVSADQSVINRCRIDAYQDTLYAHSLRQFYRDSFITGTVDFIFGDASVVFQNCKLEARKPMSNQNNMVTAQGRVDPNQNTGTSIQQCQLTPSSDLKPVVGSVKTYLGRPWKKYSRTVVMQSSLDSHIDPTGWSPWDDASSDFLKTLYYGEYMNSGPGAGTSKRVKWPGYHVITSAAEASKFTVTQLIQGNVWLKNTGVTFTEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00120 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Gabi1257g00120 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 198 IPR035513 -
Gabi1257g00120 553 FunFam Pectinesterase 3 48 198 - -
Gabi1257g00120 553 SMART PMEI_2 42 194 IPR006501 GO:0004857
Gabi1257g00120 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Gabi1257g00120 553 Gene3D - 234 553 IPR012334 -
Gabi1257g00120 553 CDD PMEI-like_4 53 198 - -
Gabi1257g00120 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 193 IPR035513 -
Gabi1257g00120 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Gabi1257g00120 553 PANTHER PECTINESTERASE 25 543 - -
Gabi1257g00120 553 FunFam Pectinesterase 234 553 - -
Gabi1257g00120 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Gabi1257g00120 553 Pfam Plant invertase/pectin methylesterase inhibitor 49 184 IPR006501 GO:0004857
Gabi1257g00120 553 NCBIfam pectinesterase inhibitor domain 24 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00120 Gabi-Chr1257 1032929 1035494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00120 3 553 Carbohydrate Esterase AT1G11580 56.106 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00120 K01051 - gmx:100815836 849.351