Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00119 ATGGCTACCCAAGAATCTCTGCTGCACAAACCTAGAAAAACCCTTTCCAAAACATTCTGGTTAATCCTCTCTGTGGCTGCTATCCTAAGCTCATCAGCCCTTATTGCTTCTTATTTCATCAAACCCACCTCCTTGCCTCGCCATGTCTGTGAACATGCAATTGACACAGCATCCTGCTTAACACATGTCTCAGAAGTAGCTCAAGGTCAAACCACAAAACACCACAAATTCAATTTACTCAAATCCTTCCTAATGAAGTCCACTTCACACATTCAGAAAGCTATGGACACAGCCAACGCTATCAAACTCAGGACTAACAGTAGTCCGAGGGAGAAAGCAGCTTTGCATGACTGCGAGCAGCTTATGGACATGTCCATGGATAGAGTTTGGGACTCTACGATGGCTCTAACAAAAGAGACCACTGCTTCGCTGCAAGATGCACACTCATGGCTAAGCTGCGTGCTCACAAACCATGTCACTTGCGTGGATGGGTTAGAGGGGTCAGCTCGGGCCCTGATGGAGGCTGAGCTCGAGGACTTGATATCCAGAGCGAGAACCTCTCTGGCCTTGCTTGTTGCGGTTTTGCCTCAAAATCCAAAGGGTGAAGTACAACTCATTGATGAGCCATTAAATGGGACCTTTCCCTCGTGGGTGACAAGTAAGGATCGGAGGCTTTTAGGGTCTTCGGTCGGGGATATCAAGGCCAACGTTGTGGTGGCTAAGGATGGAAGCGGCAACTTCAGTACAGTGGCTGAGGCTGTGGCATCCGTACCCGACAATGGTAAGACAAGGTACGTTATCTATGTGAAAAAGGGAACGTACAAAGAGAACGTTGATATTGGTAAGAAGAAGAAGAATGTGATGCTAGTGGGGGATGGCATGGATGCAACAGTAATCACCGGCAGCTTGAATTTTGTCGATGGAACTGGCACCTTTAGCACCGCCACTGTTGCTGCGAATAGTGATGGGTTTATAGCCCAGGACATGTGCTTTCAAAACACAGCAGGTCCAGAGAAGCACCAGGCAGTGGCTTTGCGCGTGAGCGCAGACCAGTCGGTGATAAACCGCTGCCGCATTGACGCCTATCAAGACACTCTCTATGCTCACAGCTTGAGGCAGTTCTACCGTGACTCCTTCATCACCGGCACCATTGACTTCATCTTTGGAGACGCATCCGTTGTGTTCCAGAATTGCAACCTGGTGGCCCGAAAGCCCATGAGTAACCAGAACAACATGGTCACGGCCCAAGGACGAGTAGATCCAAACCAGAATTCAGGAACTTCGATTCAGCAATGTCAACTAACACCAAGCTCGGATCTCAAGCCCGTCGTGGGTCCCGTTAAAACTTATCTGGGCCGCCCGTGGAAGAATTACTCGAGAACCGTTGTGATGCAGTCTTCAATAGACAGCCATATCGACCCAGCAGGATGGTCTCCATGGGATGATGCCAGTAGCAGCTTTTTGACAACGTTGTATTATGGAGAGTATATGAACAGTGGTCCAGGTGCTGGTACCAGCAAAAGAGTGAATTGGCCTGGTTACCATGTCATTACAAGTGTTGCCGAGGCTAGCAAGTTCACAGTAACGCAGCTCATACAAGGTAATGTTTGGTTGCAGAACACTGGTGTCACCTTCACTGAGGGCCTCTAG 1650 0.4897 MATQESLLHKPRKTLSKTFWLILSVAAILSSSALIASYFIKPTSLPRHVCEHAIDTASCLTHVSEVAQGQTTKHHKFNLLKSFLMKSTSHIQKAMDTANAIKLRTNSSPREKAALHDCEQLMDMSMDRVWDSTMALTKETTASLQDAHSWLSCVLTNHVTCVDGLEGSARALMEAELEDLISRARTSLALLVAVLPQNPKGEVQLIDEPLNGTFPSWVTSKDRRLLGSSVGDIKANVVVAKDGSGNFSTVAEAVASVPDNGKTRYVIYVKKGTYKENVDIGKKKKNVMLVGDGMDATVITGSLNFVDGTGTFSTATVAANSDGFIAQDMCFQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHSLRQFYRDSFITGTIDFIFGDASVVFQNCNLVARKPMSNQNNMVTAQGRVDPNQNSGTSIQQCQLTPSSDLKPVVGPVKTYLGRPWKNYSRTVVMQSSIDSHIDPAGWSPWDDASSSFLTTLYYGEYMNSGPGAGTSKRVNWPGYHVITSVAEASKFTVTQLIQGNVWLQNTGVTFTEGL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00119 549 Pfam Pectinesterase 236 535 IPR000070 GO:0030599|GO:0042545
Gabi1257g00119 549 PANTHER PECTINESTERASE 28 539 - -
Gabi1257g00119 549 FunFam Pectinesterase 230 549 - -
Gabi1257g00119 549 SUPERFAMILY Pectin lyase-like 234 548 IPR011050 -
Gabi1257g00119 549 ProSitePatterns Pectinesterase signature 1. 261 280 IPR018040 -
Gabi1257g00119 549 Gene3D - 230 549 IPR012334 -
Gabi1257g00119 549 CDD PMEI-like_4 52 194 - -
Gabi1257g00119 549 Pfam Plant invertase/pectin methylesterase inhibitor 46 180 IPR006501 GO:0004857
Gabi1257g00119 549 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 189 IPR035513 -
Gabi1257g00119 549 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 194 IPR035513 -
Gabi1257g00119 549 NCBIfam pectinesterase inhibitor domain 23 169 IPR006501 GO:0004857
Gabi1257g00119 549 SMART PMEI_2 41 190 IPR006501 GO:0004857
Gabi1257g00119 549 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00119 Gabi-Chr1257 1023844 1027562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00119 3 549 Carbohydrate Esterase AT1G11580 54.982 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00119 K01051 - gmx:100815836 830.861