LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1257g00108	ATGATTCATTCTCTAATGGTTTCCAAATCCATTCAATTCTTCCTTCTTCTTTGTTCTCTTGCTTCTCTTTCAGAGGTTGCCTTTGCCGACCCTCCATATGAAATTTGTTCCACAAGCAGCAACTACGAAAATGGAAGTTCCTTTCAAAACAATCTAAACAATCTCCTCTTCTCTTTACCCTCCAATGCTTCAATCTCCAAATCCTATAATACTTCTTTTGGGGTTGCCTCAGATAGAGTATATGGCCTCTACATGTGCCTCGACTATGTTTCAAATGAAACTTGCAAGAATTGCTTAGCCACGGCAATAGAGGACATCGTCAAACTCTGCCCTCAAGCAGAAGAAGCAGTTGTATGGGAGGAGGTATGCCAATTACGTTATTCCAATAACAATTTCATGGGTAGGTTGAATGTCACAGGTAACATTGGCAAAGATAATCAACAGAATATTTCAGAACCAGAGAAATTCCAATATGCTGTGAATAAGATATTGAGTAATATCACTGATATGGCATCTTTTAATGTTTCGGCAAACATGTATGCTACTGGAGAAGTCCCTTTTGAAGATAAAATCATATATGCCTTAGTGCAGTGCAGCAGAGATTTATCAGCCAATGATTGCAATAGTTGCCTGCAAAGTGCCATAAAAGATATACCAGGTTGTTGCTATGGCTCCATCGGTGCAAGAGTTCTGAGTCGTAGCTGTTATTTGAGATATGAGTTTTATCCGTTTTATCTTGGTGCATCAGAAACCACACCACAGGTTCTTCATCCGGCAGTTACCAAAGAAGTAAGCATTTCAAGTCACTTCAATTCAAGCAAGATATGGATGATTACAGGCATTATAGTTGTGGTGGGCTTGGCGACAATATTTTCCATTTGCTGCGTATACTTTTTCAGGAATAAAAGGAATAAGCAAAAAAGAAATGACAAAATATATGAGAACCTCCCTTATATTGATCTTGATTCTCTTTGTGTGGCTACTCAAAATTTTTCTGATTTAAATAAGCTTGGACAAGGTGGCTTTGGTCCTGTTTACAAGGGTATACTTGTTAATGGCCGGGAAGTAGCAATCAAGAGGCTCTCAACTTGCTCTGTGCAGGGATCAGAGGAATTCATAAACGAGGTTCAGCTGATAAATAAACTTCAACACAAAAATATTGTAAAGCTTCTGGGATTTTGTGTAGATGGAGAAGAGAAGCTTCTTGTTTATGAATTTTTGCCGAATGGTAGCCTTGAAGATGTCCTTTTTGAGCAACGTGCACGGCTGGATTGGACCAAACGCCTCGATATAATAAGTGGAATAGCAAAGGGGATTCTTTATCTTCATGAAGATTCTCGACTTAAAATAATTCATAGAGATCTAAAAGCAAGTAATGTGTTGTTGGACCATGACATGAATCCAAAAATCTCAGACTTTGGAATGGCAAGGATATTTGCTGGAAGTGAAGGTGAAGCTAACACTGTTACATTAGTTGGCACATATGGATATATGGCTCCAGAATATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTCGGCTTTGGAGTACTATTACTTGAGATCATTACGGGGACACGTAATGCGGGTTTCGATCACTCTAGAAGCAATCCCAGCCTTCTATCATACGCATGGCATCTATGGAATGAGGGAAAGGGGACGGAGTTAAAGGATCCTTTGTTATTGGATTCATGCTCCGAAGATCAGTTTTTGAGACTCATGAGTATTGGACTGCTATGTGTTCAAGAAGATGCATCTGATAGGCCAACCATGTCTAGGGTTGTTTTGATGTTGAGGAATGAATCATCATCGCTTGGCCAACCAGAACGGCCACCTTTCTCGGTAGGGAGATTCAGAGCTAATGATCTTAATGACCCACATTGCCAAGATTGCTCAGTCAATTTCTTGACTGTTTCTGATATTATATTGCCCCGGTGA	1944	0.3961	MIHSLMVSKSIQFFLLLCSLASLSEVAFADPPYEICSTSSNYENGSSFQNNLNNLLFSLPSNASISKSYNTSFGVASDRVYGLYMCLDYVSNETCKNCLATAIEDIVKLCPQAEEAVVWEEVCQLRYSNNNFMGRLNVTGNIGKDNQQNISEPEKFQYAVNKILSNITDMASFNVSANMYATGEVPFEDKIIYALVQCSRDLSANDCNSCLQSAIKDIPGCCYGSIGARVLSRSCYLRYEFYPFYLGASETTPQVLHPAVTKEVSISSHFNSSKIWMITGIIVVVGLATIFSICCVYFFRNKRNKQKRNDKIYENLPYIDLDSLCVATQNFSDLNKLGQGGFGPVYKGILVNGREVAIKRLSTCSVQGSEEFINEVQLINKLQHKNIVKLLGFCVDGEEKLLVYEFLPNGSLEDVLFEQRARLDWTKRLDIISGIAKGILYLHEDSRLKIIHRDLKASNVLLDHDMNPKISDFGMARIFAGSEGEANTVTLVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGTRNAGFDHSRSNPSLLSYAWHLWNEGKGTELKDPLLLDSCSEDQFLRLMSIGLLCVQEDASDRPTMSRVVLMLRNESSSLGQPERPPFSVGRFRANDLNDPHCQDCSVNFLTVSDIILPR	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1257g00108	647	SMART	serkin_6	331	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1257g00108	647	Gene3D	Phosphorylase Kinase; domain 1	293	406	-	-
	Gabi1257g00108	647	Pfam	Protein tyrosine and serine/threonine kinase	335	598	IPR001245	GO:0004672\|GO:0006468
	Gabi1257g00108	647	ProSiteProfiles	Gnk2-homologous domain profile.	138	244	IPR002902	-
	Gabi1257g00108	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Gabi1257g00108	647	ProSiteProfiles	Protein kinase domain profile.	331	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1257g00108	647	FunFam	Cysteine-rich receptor-like protein kinase 10	141	244	-	-
	Gabi1257g00108	647	CDD	STKc_IRAK	337	600	-	-
	Gabi1257g00108	647	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	36	641	-	-
	Gabi1257g00108	647	FunFam	Cysteine-rich receptor-like protein kinase 10	299	406	-	-
	Gabi1257g00108	647	FunFam	Cysteine-rich receptor-like protein kinase 28	32	131	-	-
	Gabi1257g00108	647	Gene3D	Transferase(Phosphotransferase) domain 1	407	611	-	-
	Gabi1257g00108	647	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	407	608	-	-
	Gabi1257g00108	647	SUPERFAMILY	Protein kinase-like (PK-like)	312	600	IPR011009	-
	Gabi1257g00108	647	Pfam	Salt stress response/antifungal	148	241	IPR002902	-
	Gabi1257g00108	647	Pfam	Salt stress response/antifungal	36	129	IPR002902	-
	Gabi1257g00108	647	Gene3D	-	141	244	IPR038408	-
	Gabi1257g00108	647	Gene3D	-	31	132	IPR038408	-
	Gabi1257g00108	647	ProSiteProfiles	Gnk2-homologous domain profile.	30	132	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1257g00108	Gabi-Chr1257	929093	931978	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1257g00108	10	629	Receptor kinase-like Gene Family	AT4G05200	41.960	2.65e-165	488

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi1257g00108		PK_Tyr_Ser-Thr	1.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1257g00108	-		-	gmx:102669364	930.628