LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1257g00107	ATGATTCATTCTCTAATGGTTTCCAAATCCATTCAATTCTTCCTTCTTCTTTGTTCTCTTGCTTTTCTTTCAGAGGTTGCCTTTGCCGACCCTCCATATGAAATTTGTTCCACAAGCAGCAACTACGAAAATGGAAGTTCCTTTCAGAACAATCTAAACAATCTCCTCTTCTCTTTACCCTCCAATGCTTCAATCTCCAAATCCTATAATACTTCTTTTGGGGTTGCCTCCGATAAAGTATATGGCCTCTACATGTGCCTCGACTATGTTTCAAATGAAACTTGCAAGAATTGCATAGCCACGGCAATAGAGGACATTGTCAAACTCTGCCCTCAAGCAGAAGAAGCAGTTGTATGGGAGGAGGTATGCCAATTACGTTATTCCAATAAGAATTTCATGGGTAGGTTGAATGTCACAGGTAACATTGGCAAAGATAATCAACAGAATATTTCAGAACCAGAGAAATTCCAGTATGCTGTGAATAAGATATTGAGTAATATCACTGATATGGCATCTTTTAATGTTTCGGCAAATGTGTATGCTACTGGAGAAGTCCCTTTTGAAGATAAAATCATATATGCCTTAGTGCAGTGCAGCAGAGATTTATCAGCCAATGATTGCAATAGTTGCCTGCAAAGTGCCATAAAAGATATACCAGGTTGTTGCTATGGCTCCATCGGTGCAAGAGTTCTGAGTCGTAGCTGTTATTTGAGATATGAGTTTTATCCGTTTTATCTTGGAGCATCAGAAACCACAGGTTCTTCATCCGGCAGTTACCAAAGAAGTAAGCATTTCAATTCAAGCAAGATATGGATGATTACAGGCATTATAGTTGTGGTGGGCTTGGTCACAATACTTTCCATTTGCTGCCTATGCTTTTTCAGGAATAAAAGGAATAAGCAAAGAAGAAATGGCAAAATATGTGAGGACCTCCCTTATATTGATCTTGGATCCCTTTGTGTGGCTACTCAAAAATTTTCTGATTTAAATAAGCTTGGACAAGGTGGCTTTGGTCCTGTTTACAAGGGGATACTTAGTGATGGTCAGGAAGTAGCAATCAAGAGGCTCTCAACTTGCTCTGAGCAGGGCTCAGATGAATTTATAAACGAGGTTATGCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTGGGATTTTGTGTAGATGGAGAAGAGAAGCTTCTTGTTTATGAATTTTTGCCTAATGGTAGCCTTGATGTTGTCCTTTTTGAGCAACGTGCACGGCTCGATTGGACCAAACGCCTCGATATAATAAGTGGAATAGCAAGGGGGATTCTTTATCTTCATGAAGATTCTAGACTTAAAATAATTCATAGAGATCTAAAAGCAAGTAACGTGTTGTTGGACTATGACATGAATCCAAAGATATCAGACTTTGGAATGGCAAGGATATTTGCTGGAAGTGAAGGTGAAGCTAACACTTCTACAATAGTTGGCACATATGGATATATGGCTCCAGAATATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTTTGCTTTGGAGTACTATTGCTTGAGATCATTACGGGTAAACGTAATGCGGGTTTCTATCACTCTAAAAACACTCCTAGCCTTCTATCATATGCATGGCATCTATGGAATGAGGGAAAGGGGCTGGAGTTAAAGGATCCTTTGTTATTTGACTCATGCCCTGAAGATCAGTTTTTGAGATACATGAATATTGGACTGCTATGTGTTCAAGAAGATGCATATGATAGGCCAACCATGTCTTCGGTAGTTTTGATGTTGAAGAATGAATCAGCAGCGCTTGGCCAACCAGAACGACCACCTTTCTCTGTAGGGAGATTCATGGTTAATGATCTTAATGACCAAGATTACCAAGAATGCTCGGTCAATTTCTTAACTGTTTCGGATATATTGCCCCAGTGA	1926	0.392	MIHSLMVSKSIQFFLLLCSLAFLSEVAFADPPYEICSTSSNYENGSSFQNNLNNLLFSLPSNASISKSYNTSFGVASDKVYGLYMCLDYVSNETCKNCIATAIEDIVKLCPQAEEAVVWEEVCQLRYSNKNFMGRLNVTGNIGKDNQQNISEPEKFQYAVNKILSNITDMASFNVSANVYATGEVPFEDKIIYALVQCSRDLSANDCNSCLQSAIKDIPGCCYGSIGARVLSRSCYLRYEFYPFYLGASETTGSSSGSYQRSKHFNSSKIWMITGIIVVVGLVTILSICCLCFFRNKRNKQRRNGKICEDLPYIDLGSLCVATQKFSDLNKLGQGGFGPVYKGILSDGQEVAIKRLSTCSEQGSDEFINEVMLIMKLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFEQRARLDWTKRLDIISGIARGILYLHEDSRLKIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTSTIVGTYGYMAPEYAMEGLYSIKSDVFCFGVLLLEIITGKRNAGFYHSKNTPSLLSYAWHLWNEGKGLELKDPLLFDSCPEDQFLRYMNIGLLCVQEDAYDRPTMSSVVLMLKNESAALGQPERPPFSVGRFMVNDLNDQDYQECSVNFLTVSDILPQ	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1257g00107	641	Pfam	Protein tyrosine and serine/threonine kinase	330	593	IPR001245	GO:0004672\|GO:0006468
	Gabi1257g00107	641	ProSiteProfiles	Gnk2-homologous domain profile.	30	132	IPR002902	-
	Gabi1257g00107	641	FunFam	Cysteine-rich receptor-like protein kinase 28	32	131	-	-
	Gabi1257g00107	641	CDD	STKc_IRAK	332	597	-	-
	Gabi1257g00107	641	Gene3D	Phosphorylase Kinase; domain 1	289	401	-	-
	Gabi1257g00107	641	Gene3D	-	141	244	IPR038408	-
	Gabi1257g00107	641	Gene3D	-	31	132	IPR038408	-
	Gabi1257g00107	641	Gene3D	Transferase(Phosphotransferase) domain 1	402	605	-	-
	Gabi1257g00107	641	FunFam	Cysteine-rich receptor-like protein kinase 10	141	244	-	-
	Gabi1257g00107	641	SMART	serkin_6	326	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1257g00107	641	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	445	457	IPR008271	GO:0004672\|GO:0006468
	Gabi1257g00107	641	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	37	636	-	-
	Gabi1257g00107	641	Pfam	Salt stress response/antifungal	148	241	IPR002902	-
	Gabi1257g00107	641	Pfam	Salt stress response/antifungal	36	129	IPR002902	-
	Gabi1257g00107	641	FunFam	Cysteine-rich receptor-like protein kinase 10	294	401	-	-
	Gabi1257g00107	641	ProSiteProfiles	Gnk2-homologous domain profile.	138	244	IPR002902	-
	Gabi1257g00107	641	ProSiteProfiles	Protein kinase domain profile.	326	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1257g00107	641	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	402	603	-	-
	Gabi1257g00107	641	SUPERFAMILY	Protein kinase-like (PK-like)	310	595	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1257g00107	Gabi-Chr1257	908161	910739	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1257g00107	29	610	Receptor kinase-like Gene Family	AT4G05200	44.190	1.91e-170	501

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi1257g00107		PK_Tyr_Ser-Thr	1.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1257g00107	-		-	gmx:102669364	962.985