Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00105 ATGGACAAAGATAGATCTTCAGCTATGCTTTTGTTCATCATTTTTATGTTATCTATCCACAGCGTTTTTGGTGCAGACCTTATTGCTATCTATTGTCCGAATGAATTCCCATTTTACACTCCCAACAATTCATTCCACAATAACCTCAAGCTTCTTCTGGGGTTGTTGTCCTCCGACACCGCTTCAGAGGCAGGTTTCTATAACACATCTACAGGAGAAGGGCCAGACCAAGTGTATGGACAAGCACTCTGCAGAGGGGACATCACCAACTCCACAGTTTGCAAGGAATGCATTGAGAAAGCAAGCCAAGATATAATGAATAGGTGCACCAGTGAAGATGCAATGATATGGTATGAACTTTGCCAAGTTCGGTACTCCTTTCAGATGTTTATATCAAGGATGGTTTATACTGGAAAGTATCCACCGCATAATGATCAGGAGAAGAATGTCTCAGATCCTATTGGATTTGATAAATTCTTGACTTTCTTAATGAACAATCTCTCATATGAGGCTGCTTTTAATCCTGCTAAGAACATGTTTGCAGCTGGGGAAATTGATATCCCTGGGACGAAGACAATTTATGGACTAGTCCAGTGTACCAGGGACATTTCTGAAACAGACTGTAGTAGTTGTTTGAGTTCTGCATTAATGGACCTTACTGCATGTTGTTCCTACCGGGAAGGAGGGATGATTGTTAGTAGGACTTGCAATGTGAGGTTCGAATCGTCTGAGTTCTTTAATACTTCATCAGCATACCAGTTGATTTACCCAACTTCGAAAGTTCTTATTGGGCTGTGCACTGTTTGCTTCTGGCGAAAAAAGGATAGAGACAGAGGTGAAGAAAAAAGCGAAATGACTCTATTACAAGAGTTAGCTAGCCCCAAGAAAGTAGAAATTACACAAGAAGGTGACTTGATTAGTTCAGATGAACTGTTGTTCATGAAGTTAGCAACAGTTAAGGCCGCTACTGATGACTTTTCTGATACAAATAAGCTGGGTCAAGGAGGGTTTGGTGCGGTGTACAAGGGTGTTCTGCCAGATGGTAATGAAATAGCAGTTAAAAGATTATCAAGAAAGTCTTGGCAAGGAATAGAGGAATTCAAAAATGAGGTCAAACTAATTGCCAAACTTCAACATAGGAATTTGGTGAGGCTAGTGGGCTGTGTCTTAGAGGGAGAGGAAAAGCTACTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGTTCCAGAAAAACGTTCCAAACTTGATTGGAAGACATGCTATGGCATTATCAATGGCGTAGCCAGAGGCCTACTTTATCTTCACGAGGAGTCTCGGCTTAAAATCATTCACAGAGACCTAAAACCAAACAATGTGCTGTTGGACCATGAACTAGTTGCTAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCAAACACGAAAAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAGGGTTTGTTCTCCGTTAAATCTGATGTCTTCAGCTTTGGTGTGATCTTGCTCGAAATCATCAGCGGTAAAAGAAATAGCGGCTTTTACATAACTGAAATTGCCCCGACACTGCTGGCATATGCATGGCGGCTGTGGAATGAAGGGAAAGAATTGGAATTTGTGGATCCTGTGTTATTGGAATCATGTCTTTCCTACGAAGTTCTGAGGTGCATGCACATTGGGCTCCTGTGCGTGCAGGAAGATCCTGAACTCAGGCCCACCATGTCAGATGTTGTGGTTCTCCTAGGAAGTGAATCAATGGCTCTTCCCCAACCAAGACAACCAGCATTTTCTTTGGGTAGGGTGCTTCATGTCGATCCATCTATGCCAACAAATCCTTCCATTAATGAGATTATTTTGTCTAGTATTTTACCACGATGA 1926 0.4138 MDKDRSSAMLLFIIFMLSIHSVFGADLIAIYCPNEFPFYTPNNSFHNNLKLLLGLLSSDTASEAGFYNTSTGEGPDQVYGQALCRGDITNSTVCKECIEKASQDIMNRCTSEDAMIWYELCQVRYSFQMFISRMVYTGKYPPHNDQEKNVSDPIGFDKFLTFLMNNLSYEAAFNPAKNMFAAGEIDIPGTKTIYGLVQCTRDISETDCSSCLSSALMDLTACCSYREGGMIVSRTCNVRFESSEFFNTSSAYQLIYPTSKVLIGLCTVCFWRKKDRDRGEEKSEMTLLQELASPKKVEITQEGDLISSDELLFMKLATVKAATDDFSDTNKLGQGGFGAVYKGVLPDGNEIAVKRLSRKSWQGIEEFKNEVKLIAKLQHRNLVRLVGCVLEGEEKLLIYEFMSNKSLDQFIFVPEKRSKLDWKTCYGIINGVARGLLYLHEESRLKIIHRDLKPNNVLLDHELVAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKRNSGFYITEIAPTLLAYAWRLWNEGKELEFVDPVLLESCLSYEVLRCMHIGLLCVQEDPELRPTMSDVVVLLGSESMALPQPRQPAFSLGRVLHVDPSMPTNPSINEIILSSILPR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00105 641 Gene3D Phosphorylase Kinase; domain 1 285 401 - -
Gabi1257g00105 641 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 617 - -
Gabi1257g00105 641 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
Gabi1257g00105 641 SUPERFAMILY Protein kinase-like (PK-like) 309 596 IPR011009 -
Gabi1257g00105 641 FunFam Uncharacterized protein 402 603 - -
Gabi1257g00105 641 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Gabi1257g00105 641 Gene3D Transferase(Phosphotransferase) domain 1 402 604 - -
Gabi1257g00105 641 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 130 - -
Gabi1257g00105 641 CDD STKc_IRAK 332 594 - -
Gabi1257g00105 641 Pfam Protein tyrosine and serine/threonine kinase 329 595 IPR001245 GO:0004672|GO:0006468
Gabi1257g00105 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Gabi1257g00105 641 Pfam Salt stress response/antifungal 148 242 IPR002902 -
Gabi1257g00105 641 Pfam Salt stress response/antifungal 37 127 IPR002902 -
Gabi1257g00105 641 ProSiteProfiles Protein kinase domain profile. 326 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00105 641 FunFam Cysteine-rich receptor-like protein kinase 10 142 245 - -
Gabi1257g00105 641 SMART serkin_6 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00105 641 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Gabi1257g00105 641 Gene3D - 141 245 IPR038408 -
Gabi1257g00105 641 Gene3D - 25 130 IPR038408 -
Gabi1257g00105 641 FunFam Cysteine-rich receptor-like protein kinase 10 289 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00105 Gabi-Chr1257 885820 888606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00105 7 614 Receptor kinase-like Gene Family AT4G05200 42.415 1.49e-167 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1257g00105 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00105 - - gmx:102669229 975.696