Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00104 ATGAACCTGGTTATGAACATATCCTCCATGGCTGCTTCGTTGAAGCTTGTGTTGCTATTTATCATTCTTAGCTTCCTCAACCTTGGTACTGGTAAAGCACAGGAATTGGATTCCCCTGTGTATCTTTACCAAAACTGCTCAACCAACACCACCGGCAACAGTGCCTACCAACTGGACCTGAGGACCCTTCTCGGTTCCTTATCTTCCAACGCCACTGGCACCACCAAATTCTACAACACCACCGTCGCCGGAAGATCCCCCTCCGACACGGTGTTTGGACTTTTCATGTGCAGGGGTGATGTGCCCTCTCAGTTGTGTCGGCAATGCGTGGTGAACGCAACGCAGCGACTGCGCTCACAGTGCTCACGGTCCAAAAGGGCAGTGATATGGTACGATGAGTGCATGGTTCGTTTTTCCAACAGGTCTTTCTTCTCCACTGTGGACACAAGGCCTCGACTTGGCCTTCTCAACACTGCCAACATCTCCAACCAGGAAAGCTTCATGCATTTACTGTTTCAAACAATAAACCAAACTGCTGATGAGGCTGCAAGTTTTTCTATTGGTGTCAAGAATTATGCCACGAACAAAGCAAACATATCTGGGTTTCAGTCCCTCTATTGTATGGCTCAGTGCACACCAGATTTGTCACCCCAAGATTGTAGAAGTTGTCTCAGTGGTGTGATAGGGGACCTTCCATGGTGTTGTCAAGGAAAACAGGGAGGAAGGGTTCTCTATCCCAGCTGTAATGTCAGATATGAGCTCTACCCTTTCTATCGCACAATTACTCCTAATACTACAATTTCTCCAAATTCTACAATTCCTCCAAATTCGGGAGGAGGAGGAAGCAGTGGGATTTCAGCTGGGACAATTGTTGCAATTGTGGTTCCAATCGTAGTAGCTGTGCTTCTATTTATCGTGGGAATTTGTTTCTTAAGTAAAAGAGCAAGGAAGAAGAATGATTCTGCACAAGGAAAGACTGCATATGACATCACCGATGTGGAGTCCTTGCAATTCGATTTCGGCACAATTGAAGCAGCCACGAACAAATTCTCTGCAGATAACAAGTTGGGTGAAGGTGGATTTGGTACGGTTTACAAGGGCACTCTTCCAAGCGGACAAGAAATTGCTGTCAAGAGACTCTCCAAAAGCTCCGGGCAAGGTGCAGAAGAATTTAAGAATGAAGTAGTGGTGGTTGCCAAGCTTCAACACAGAAATTTAGTGAGGCTTCTGGGATTTTGCTTGCAGGGAGAAGAAAAGATACTTGTTTATGAATATGTGCCCAACAAAAGTCTGGACTATATTCTTTTTGATCCTGAAAAGCAAAGGGAGTTGGATTGGACAAGACGGTACAAGATTATTGCAGGGATTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGTGATCTTAAAGCTAGCAACATATTGTTAGATGGAGATATGATTCCGAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCAGCAGAATTGTAGGGACTTATGGTTACATGGCTCCAGAGTATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGATGTATACAGTTTTGGAGTCCTCATTCTGGAGATTATTAGTGGCAAGAAGAATAGCTCTTTCTATCAAACAGACGGTGCTGAGGATCTATTGAGCTATACTTGGCAACTTTGGAAGGATGGAAAACCCTTGGAACTGATGGACCCCATATTAAGAGAATCCTGTAATCCAAATGAAGTTATCAGAAGCATCCACATTGGTTTGCTCTGTGTCCAAGAAGACCCAGCTGACAGACCTACAATGGCAAGAATAGTTCTTATGCTAGAGAGTGACACTGTTACTCTACCAACACCTAAGCAGCCTGCATTTTTCCCCCAGAGTGGAACTGATCCAAACATGCCAAAGGAACTGCAATTTGATCAATCTACAACAAAGTCAATACCAATTTCTGTGAATGAGATGTCGATTAGTGAAATGGATCCTCGATAA 2028 0.4384 MNLVMNISSMAASLKLVLLFIILSFLNLGTGKAQELDSPVYLYQNCSTNTTGNSAYQLDLRTLLGSLSSNATGTTKFYNTTVAGRSPSDTVFGLFMCRGDVPSQLCRQCVVNATQRLRSQCSRSKRAVIWYDECMVRFSNRSFFSTVDTRPRLGLLNTANISNQESFMHLLFQTINQTADEAASFSIGVKNYATNKANISGFQSLYCMAQCTPDLSPQDCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRTITPNTTISPNSTIPPNSGGGGSSGISAGTIVAIVVPIVVAVLLFIVGICFLSKRARKKNDSAQGKTAYDITDVESLQFDFGTIEAATNKFSADNKLGEGGFGTVYKGTLPSGQEIAVKRLSKSSGQGAEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKQRELDWTRRYKIIAGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMIPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLILEIISGKKNSSFYQTDGAEDLLSYTWQLWKDGKPLELMDPILRESCNPNEVIRSIHIGLLCVQEDPADRPTMARIVLMLESDTVTLPTPKQPAFFPQSGTDPNMPKELQFDQSTTKSIPISVNEMSISEMDPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00104 675 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Gabi1257g00104 675 FunFam cysteine-rich receptor-like protein kinase 10 426 628 - -
Gabi1257g00104 675 Gene3D - 39 143 IPR038408 -
Gabi1257g00104 675 Gene3D - 152 257 IPR038408 -
Gabi1257g00104 675 ProSiteProfiles Protein kinase domain profile. 350 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00104 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Gabi1257g00104 675 Pfam Salt stress response/antifungal 46 140 IPR002902 -
Gabi1257g00104 675 Pfam Salt stress response/antifungal 162 255 IPR002902 -
Gabi1257g00104 675 Gene3D Phosphorylase Kinase; domain 1 310 425 - -
Gabi1257g00104 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 675 - -
Gabi1257g00104 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 39 142 - -
Gabi1257g00104 675 FunFam Cysteine-rich receptor-like protein kinase 25 151 257 - -
Gabi1257g00104 675 FunFam Cysteine-rich receptor-like protein kinase 10 313 425 - -
Gabi1257g00104 675 CDD STKc_IRAK 356 622 - -
Gabi1257g00104 675 Pfam Protein tyrosine and serine/threonine kinase 352 619 IPR001245 GO:0004672|GO:0006468
Gabi1257g00104 675 ProSiteProfiles Gnk2-homologous domain profile. 38 143 IPR002902 -
Gabi1257g00104 675 SUPERFAMILY Protein kinase-like (PK-like) 335 645 IPR011009 -
Gabi1257g00104 675 ProSiteProfiles Gnk2-homologous domain profile. 149 257 IPR002902 -
Gabi1257g00104 675 Gene3D Transferase(Phosphotransferase) domain 1 426 629 - -
Gabi1257g00104 675 SMART serkin_6 350 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00104 Gabi-Chr1257 882058 885188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00104 17 675 Receptor kinase-like Gene Family AT4G05200 54.399 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1257g00104 PK_Tyr_Ser-Thr 8.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00104 - - gmx:100305391 1056.59