Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00103 ATGAACCTGGTTATGAACATATCCTCCATGGCTGCTTCGTTGAAGCTTGTGTTGCTATTTATCATTCTTAGCTTCCTCAACCTTGGTACTGGTAAAGCACAGGAATTGGATTCCCCTGTGTATCTTTACCAAAACTGCTCAACCAACACCACCGGCAACAGTGCCTACCAACTGGACCTGAGGACCCTTCTCGGTTCCTTATCTTCCAACGCCACTGGCACCACCAAATTCTACAACACCACCGTCGCCGGAAGATCCCCCTCCGACACGGTGTTTGGACTTTTCATGTGCAGGGGTGATGTGCCCTCTCAGTTGTGTCGGCAATGCGTGGTGAACGCAACGCAGCGACTGCGCTCACAGTGCTCACGGTCCAAAAGGGCAGTGATATGGTACGATGAGTGCATGGTTCGTTTTTCCAACAGGTCTTTCTTCTCCACTGTGGACACAAGGCCTCGACTTGGCCTTCTCAACACTGCCAACATCTCCAACCAGGAAAGCTTCATGCATTTACTGTTTCAAACAATAAACCAAACTGCTGATGAGGCTGCAAGTTTTTCTATTGGTGTCAAGAATTATGCCACGAACAAAGCAAACATATCTGGGTTTCAGTCCCTCTATTGTATGGCTCAGTGCACACCAGATTTGTCACCCCAAGATTGTAGAAGTTGTCTCAGTGGTGTGATAGGGGACCTTCCATGGTGTTGTCAAGGAAAACAGGGAGGAAGGGTTCTCTATCCCAGCTGTAATGTCAGATATGAGCTCTACCCTTTCTATCGCACAATTACTCCTAATACTACAATTTCTCCAAATTCTACAATTCCTCCAAATTCGGGAGGAGGAAGCAGTGGGATTTCAGCTGGGACAATTGTTGCAATTGTGGTTCCAATCGTAGTAGCTGTGCTTCTATTTATCGTGGGAATTTGTTTCTTAAGTAAAAGAGCAAGGAAGAAGAATGATTCTGCACAAGGAAAGACTGCATATGACATCACCGATGTGGAGTCCTTGCAATTCGATTTCGGCACAATTGAAGCAGCCACGAACAAATTCTCTGCAGATAACAAGTTGGGTGAAGGTGGATTTGGTACGGTTTACAAGGGCACTCTTCCAAGCGGACAAGAAATTGCTGTCAAGAGACTCTCCAAAAGCTCCGGGCAAGGTGCAGAAGAATTTAAGAATGAAGTAGTGGTGGTTGCCAAGCTTCAACACAGAAATTTAGTGAGGCTTCTGGGATTTTGCTTGCAGGGAGAAGAAAAGATACTTGTTTATGAATATGTGCCCAACAAAAGTCTGGACTATATTCTTTTTGATCCTGAAAAGCAAAGGGAGTTGGATTGGACAAGACGGTACAAGATTATTGCAGGGATTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGTGATCTTAAAGCTAGCAACATATTGTTAGATGGAGATATGATTCCGAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCAGCAGAATTGTAGGGACTTATGGTTACATGGCTCCAGAGTATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGATGTATACAGTTTTGGAGTCCTCATTCTGGAGATTATTAGTGGCAAGAAGAATAGCTCTTTCTATCAAACAGACGGTGCTGAGGATCTATTGAGCTATACTTGGCAACTTTGGAAGGATGGAAAACCCTTGGAACTGATGGACCCCATATTAAGAGAATCCTGTAATCCAAATGAAGTTATCAGAAGCATCCACATTGGTTTGCTCTGTGTCCAAGAAGACCCAGCTGACAGACCTACAATGGCAAGAATAGTTCTTATGCTAGAGAGTGACACTGTTACTCTACCAACACCTAAGCAGCCTGCATTTTTCCCCCAGAGTGGAACTGATCCAAACATGCCAAAGGAACTGCAATTTGATCAATCTACAACAAAGTCAATACCAATTTCTGTGAATGAGATGTCGATTAGTGAAATGGATCCTCGATAA 2025 0.438 MNLVMNISSMAASLKLVLLFIILSFLNLGTGKAQELDSPVYLYQNCSTNTTGNSAYQLDLRTLLGSLSSNATGTTKFYNTTVAGRSPSDTVFGLFMCRGDVPSQLCRQCVVNATQRLRSQCSRSKRAVIWYDECMVRFSNRSFFSTVDTRPRLGLLNTANISNQESFMHLLFQTINQTADEAASFSIGVKNYATNKANISGFQSLYCMAQCTPDLSPQDCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRTITPNTTISPNSTIPPNSGGGSSGISAGTIVAIVVPIVVAVLLFIVGICFLSKRARKKNDSAQGKTAYDITDVESLQFDFGTIEAATNKFSADNKLGEGGFGTVYKGTLPSGQEIAVKRLSKSSGQGAEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKQRELDWTRRYKIIAGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMIPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLILEIISGKKNSSFYQTDGAEDLLSYTWQLWKDGKPLELMDPILRESCNPNEVIRSIHIGLLCVQEDPADRPTMARIVLMLESDTVTLPTPKQPAFFPQSGTDPNMPKELQFDQSTTKSIPISVNEMSISEMDPR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00103 674 Pfam Protein tyrosine and serine/threonine kinase 351 618 IPR001245 GO:0004672|GO:0006468
Gabi1257g00103 674 SUPERFAMILY Protein kinase-like (PK-like) 334 644 IPR011009 -
Gabi1257g00103 674 Gene3D - 39 143 IPR038408 -
Gabi1257g00103 674 Gene3D - 152 257 IPR038408 -
Gabi1257g00103 674 FunFam Cysteine-rich receptor-like protein kinase 10 312 424 - -
Gabi1257g00103 674 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Gabi1257g00103 674 Pfam Salt stress response/antifungal 46 140 IPR002902 -
Gabi1257g00103 674 Pfam Salt stress response/antifungal 162 255 IPR002902 -
Gabi1257g00103 674 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 39 142 - -
Gabi1257g00103 674 FunFam Cysteine-rich receptor-like protein kinase 25 151 257 - -
Gabi1257g00103 674 FunFam cysteine-rich receptor-like protein kinase 10 425 627 - -
Gabi1257g00103 674 Gene3D Phosphorylase Kinase; domain 1 309 424 - -
Gabi1257g00103 674 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 674 - -
Gabi1257g00103 674 ProSiteProfiles Gnk2-homologous domain profile. 38 143 IPR002902 -
Gabi1257g00103 674 ProSiteProfiles Gnk2-homologous domain profile. 149 257 IPR002902 -
Gabi1257g00103 674 SMART serkin_6 349 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00103 674 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Gabi1257g00103 674 ProSiteProfiles Protein kinase domain profile. 349 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00103 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Gabi1257g00103 674 CDD STKc_IRAK 355 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00103 Gabi-Chr1257 882057 885188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00103 17 674 Receptor kinase-like Gene Family AT4G05200 54.479 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1257g00103 PK_Tyr_Ser-Thr 8.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00103 - - gmx:100305391 1056.59