Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00100 ATGGTTACCTCAAAACAATACTGGGCAACCTTTTACACACTTCTCCCCCTGTTTGGGATGCTAAGCTTGGCAACCCAATCATTTCCTACTTACGTTGGATCTTACTGTAACAACAATACCACATACGCACCTGACAGCAGACTAGGTAACAATCTGAATGTCCTACTCTATACTCTAACAACCAATGCCTCCCAACAACAGGACGGTTACTACATGACAATCATGGGCTTCGGAACCACTGATGCAGTCAACGGCCTGTTTCTCTGCCGCGGCGACCTCAACACCACCATGTGCCAACAGTGTGTCGCCACCGCCGCCAAAGAGATAACACGCCGCTGCACCAACCAAACCGAGGCCGTGATCTGGTACGAGGAGTGTTTATTGCGTTACACAAACAGGTACTTCAAGTACTACAGCATCGTCCCCGGATTGTACCTGCCGGATGGTAACAACGTATCTGCCGTTGACTTGCAACGGTTCAACCAATCATTGTTTAGTTTGTTCGATGAGTTGACAACGGAAGCGGCGAATTCCCCGTCTGCAAAGAAATTCGCCACCGGGGAAGTTGGAGTAACCAGCTCTCAGACGGTGTATGGGTTGGCGCAGTGCACCACAGACTTAACGAGTTCTCAGTGTGAGACGTGCTTACAAAGTGCCATTGGAACTCTTCCGGCGTGTTGCAGTGGACAACAAGGCGCAAGTGCTATGCTTTCGTCCTGTATTGTCAGATATGAACTGTACCCATTTTACAGTAAAACAGGGTTACCATCTTCATCTTCTTCAGGGAAAAATAAACTTGGAACAAAAACAATTGTCATCATTGTTTTCGCGGTCTTCATTCCGGTAAAACTCTTACTTTTAGGCTGGTACTGCCTGCGGAGAAGATCCAAGACGAAACGTAGGACAATTCTAAAGGAAAATTTTGGGGATGAACTTAAAACTTTGGAGTCATTACAATTCAGTTTGGCTACAGTTGAAGCTGCGACAAACAAGTTTTCGCAGGAAAACAAAATAGGCAAAGGAGGATTTGGAGTTGTCTACAAGGGTGTTTTTTTGGATGGACGACAAATAGCAGTGAAGAAACTCTCAAGAAGTTCAGGACAAGGTTCACATGAATTCAAAAATGAGATTTTATTAATAGCCAAACTTCAACACAGAAATTTGGTGACTTTATTAGGATTCTGCTTGGAAGATCAAGAAAAAATACTTATATATGAATATGTGCCTAACAAGAGCCTCGATTACTTTCTATTTGATACCAAGAAGCAAAGAATATTACATTGGTTTGAGCGTTATAAAATCATAGGAGGAATTGCACGAGGAATTCTTTATCTACATGAACATTCACGACTTAAAGTCATACATCGAGATCTGAAACCTAGCAATGTGTTGTTAGATGACAATATGAATCCAAAAATATCAGATTTTGGCTTGGCAAAAATAGTTACAATAGATGAAGAACAAGGAAATACTAACAGAATTGTCGGAACATATGGTTATATGTCTCCAGAATATGCAATGCATGGCCAATTTTCTGAGAAGTCAGACGTATTTAGTTTTGGAGTCATAATTCTTGAGATAGTTAGTGCAAAGAGGAATGCTCGTCCTATTGAATCACACGATTTTGATGACCTCCTAAGCACTGCTTGGAGACAATGGAGGAACCAAACACCCTTAGAAATATTGGACCCTAATCTAAAAGATTCATTTTCCCCCAGTGAAGTTATTAAGTGCATTCAAGTTGGTTTATTATGTGTCCAAGATAACCCAGATAATAGACCTACAATGGCAAAAATTGTTTCATATTTCGGCAGCCTTTTAGTTGAATTGCCAATTCCCGGAGAACCTGCATTTTCCATGGACAATGGAGCACCTGCCTCGAGTTCGGGTCAATCTACTAATTATTCTGCAGTATCCTCAATCAATGACATGTCTAAGAATCCATCAGAAAATGCAACTGATGCCAATTTCCAATCCAACCTGACTTCCCTATTGGATTCTTTATCTTTAAAAGTTTCACTCCAGAGCTTCTACAATGATAGTATTTCTAGTAACCTCTATGGCCTCTTCCTATGCAGGGGTGATGTTTCCAGTGACACATGCCAAAATTGTACCAGAACTGCAAGTGAAGAAATCAAAACCCGATGTGAATATAACACAAGTGCAATCATCTGGTATGAAAAATGCATGCTTCGGTACTCCAAAAAAAACTTCTTTGGAAAGGCACAAACTTATCCAGAAGCATTCATGTGGAACGTCAACAATAGAACTTCACCCATTCAAGATGATATCGAAGCACAAGCTCTGATTTACCAATTAATAAAAGAAGCCTCAAATACGGATATGCTGTTCAAAACAGGAAAATCATTGGGGAAAAATGAGTCTCAGAATAGATATGGGTTGGTTCAATGCACAAGAGATATAAATGGGAGTTCATGCGCCACTTGTTTGTCTCAGTTGATGAAGGAGGCTCAACAGTTTTGCCAACACAAGGTTGGGTGGCGCATAATGGGTCCAAGTTGCAATATAAGGTATGAGAGGTATATCTTCTATCAGCATACTTTGGTGCCACCAGATATCTCTACAAAGCAGCTTGTCCTACCAGTTATACCAATTACAGTTGTTGCGATCCTTTTGGGTTTAGGGTGGGTTTCATGTTCTCTCTGGAAAAGCAGAAAAAGAGGAGGTGGAACAAGTGATGAAATTCAAGTCAAGAATTTGAAAAGCTCAAGAAGGTCACACTTTAAGAAGCAAGGAATGAATGCAACACATGAAGACAACAGTGGAGAAGTGCACTATTTTAGTTTGAGAACGATTAAGGTTGCTACCAACTATTTCTCTGATGGAGCTAAGCTTGGGGAAGGTGGCTTCGGACCAGTTTTCAAGGGGAAGTTGATTAATGGCAAGGAAATAGCAGTTAAAAGGCTTTTATTCAAATCAAGGCAAGGCCTTGAAGAATTCAAGAATGAAATGGTGTTAATCGCCAAACTTCAACACAGAAATCTTGTCAGGCTTTTGGGATGCTGCCTCGATGAAAATGAAAAGCTTCTTGTCTATGAGTACATGACCAACACTAGTCTCGACGTTTTCCTGTTTGATCCAAACAAACGTATAGAGCTGGAGTGGCCAAAGCGGGTTAAAATTATAAATGGAATTGCAAAAGGCCTTCTGTATTTACACGAGGACTCAAGGCTGAAAATTATCCATAGGGATTTAAAAGCTAGCAATGTGTTGCTAGATGAAGAGATGAACCCAAAGATATCAGACTTTGGGACTGCTAGGATTTTTGGGGGCAATCAAATTGAAGCAACCACTGAAAGAGTTGTTGGTACATATGGTTACATGGCACCAGAATATGCCTTGGAGGGGTTATTTTCCATCAAGTCTGATGTTTACAGCTTCGGAGTTCTGATACTAGAAATTATGAGCGGGAGAAAGAACACTGGCTTCTACCAATCAGAGCGTGGTCATTGTAGTGGACAAAGCCTTATATCCGATGCATGGCGACTCTGGAGTGAAGGCAAGGGACTTCAATTTATGGATCCTTTCTTGGTCAACTCTTGCCCCATAGGTGAGGCGTTGAGATGGATCCATATTGGGTTGTTGTGCGTTCAAGAAAGACCCATGGATAGGCCCACCATATCATCAGTTGTTCTCATGCTTGGAAGTGCCATTAATATTCCTCGACCATCTGCACCTCCATTTTCCATAGGCAGATATTTTGCATCTGAACAATCTTCAACCACTGGAAGAGAGATTGACTTTCTACCATCTTCAAGTAATGATTCTATTAAGGAAGTTTAA 3804 0.4117 MVTSKQYWATFYTLLPLFGMLSLATQSFPTYVGSYCNNNTTYAPDSRLGNNLNVLLYTLTTNASQQQDGYYMTIMGFGTTDAVNGLFLCRGDLNTTMCQQCVATAAKEITRRCTNQTEAVIWYEECLLRYTNRYFKYYSIVPGLYLPDGNNVSAVDLQRFNQSLFSLFDELTTEAANSPSAKKFATGEVGVTSSQTVYGLAQCTTDLTSSQCETCLQSAIGTLPACCSGQQGASAMLSSCIVRYELYPFYSKTGLPSSSSSGKNKLGTKTIVIIVFAVFIPVKLLLLGWYCLRRRSKTKRRTILKENFGDELKTLESLQFSLATVEAATNKFSQENKIGKGGFGVVYKGVFLDGRQIAVKKLSRSSGQGSHEFKNEILLIAKLQHRNLVTLLGFCLEDQEKILIYEYVPNKSLDYFLFDTKKQRILHWFERYKIIGGIARGILYLHEHSRLKVIHRDLKPSNVLLDDNMNPKISDFGLAKIVTIDEEQGNTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIILEIVSAKRNARPIESHDFDDLLSTAWRQWRNQTPLEILDPNLKDSFSPSEVIKCIQVGLLCVQDNPDNRPTMAKIVSYFGSLLVELPIPGEPAFSMDNGAPASSSGQSTNYSAVSSINDMSKNPSENATDANFQSNLTSLLDSLSLKVSLQSFYNDSISSNLYGLFLCRGDVSSDTCQNCTRTASEEIKTRCEYNTSAIIWYEKCMLRYSKKNFFGKAQTYPEAFMWNVNNRTSPIQDDIEAQALIYQLIKEASNTDMLFKTGKSLGKNESQNRYGLVQCTRDINGSSCATCLSQLMKEAQQFCQHKVGWRIMGPSCNIRYERYIFYQHTLVPPDISTKQLVLPVIPITVVAILLGLGWVSCSLWKSRKRGGGTSDEIQVKNLKSSRRSHFKKQGMNATHEDNSGEVHYFSLRTIKVATNYFSDGAKLGEGGFGPVFKGKLINGKEIAVKRLLFKSRQGLEEFKNEMVLIAKLQHRNLVRLLGCCLDENEKLLVYEYMTNTSLDVFLFDPNKRIELEWPKRVKIINGIAKGLLYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGNQIEATTERVVGTYGYMAPEYALEGLFSIKSDVYSFGVLILEIMSGRKNTGFYQSERGHCSGQSLISDAWRLWSEGKGLQFMDPFLVNSCPIGEALRWIHIGLLCVQERPMDRPTISSVVLMLGSAINIPRPSAPPFSIGRYFASEQSSTTGREIDFLPSSSNDSIKEV 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00100 1267 FunFam Cysteine-rich receptor-like protein kinase 10 144 249 - -
Gabi1257g00100 1267 SMART serkin_6 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00100 1267 SMART serkin_6 946 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00100 1267 FunFam Uncharacterized protein 1022 1226 - -
Gabi1257g00100 1267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1067 1079 IPR008271 GO:0004672|GO:0006468
Gabi1257g00100 1267 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Gabi1257g00100 1267 ProSiteProfiles Gnk2-homologous domain profile. 639 738 IPR002902 -
Gabi1257g00100 1267 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 910 1021 - -
Gabi1257g00100 1267 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00100 1267 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 293 407 - -
Gabi1257g00100 1267 FunFam cysteine-rich receptor-like protein kinase 10 408 610 - -
Gabi1257g00100 1267 Pfam Salt stress response/antifungal 768 848 IPR002902 -
Gabi1257g00100 1267 Pfam Salt stress response/antifungal 158 247 IPR002902 -
Gabi1257g00100 1267 Pfam Salt stress response/antifungal 649 735 IPR002902 -
Gabi1257g00100 1267 Pfam Salt stress response/antifungal 36 132 IPR002902 -
Gabi1257g00100 1267 ProSiteProfiles Gnk2-homologous domain profile. 744 850 IPR002902 -
Gabi1257g00100 1267 MobiDBLite consensus disorder prediction 622 653 - -
Gabi1257g00100 1267 SUPERFAMILY Protein kinase-like (PK-like) 318 632 IPR011009 -
Gabi1257g00100 1267 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Gabi1257g00100 1267 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Gabi1257g00100 1267 Pfam Protein kinase domain 333 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00100 1267 MobiDBLite consensus disorder prediction 619 653 - -
Gabi1257g00100 1267 Gene3D Transferase(Phosphotransferase) domain 1 408 609 - -
Gabi1257g00100 1267 Gene3D Transferase(Phosphotransferase) domain 1 1022 1228 - -
Gabi1257g00100 1267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Gabi1257g00100 1267 Gene3D Phosphorylase Kinase; domain 1 919 1021 - -
Gabi1257g00100 1267 CDD STKc_IRAK 338 606 - -
Gabi1257g00100 1267 Gene3D - 29 135 IPR038408 -
Gabi1257g00100 1267 Gene3D - 147 249 IPR038408 -
Gabi1257g00100 1267 Gene3D - 638 738 IPR038408 -
Gabi1257g00100 1267 Gene3D - 747 850 IPR038408 -
Gabi1257g00100 1267 SUPERFAMILY Protein kinase-like (PK-like) 928 1238 IPR011009 -
Gabi1257g00100 1267 Pfam Protein tyrosine and serine/threonine kinase 949 1214 IPR001245 GO:0004672|GO:0006468
Gabi1257g00100 1267 ProSiteProfiles Protein kinase domain profile. 946 1225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1257g00100 1267 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Gabi1257g00100 1267 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 135 - -
Gabi1257g00100 1267 CDD STKc_IRAK 952 1221 - -
Gabi1257g00100 1267 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00100 Gabi-Chr1257 859107 869450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00100 17 645 Receptor kinase-like Gene Family AT4G05200 45.152 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1257g00100 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00100 - - pvy:116121423 1150.58