Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00097 ATGTCGAGTTTAATTAAGAGAAGCAATGGTCGCAGAAAGGTTGAGATGAAGAAGATGATGAACGAGAGCAACCTCCAAGTCACCTTCTCCAAACGCCGCATTGGGCTTTTCAAAAAAGCCAGCGAGCTTAGCACTCTTTGCGGAGCTGAGGTTGCTCTTATCATCTTCTCCCCTGGTGATAAGGTCTTCTCTTTTGGTCACCCCAATGTTAACGCTCTCATACATCGCTACCTTATGGGGGGCCCACCACAATCACTCGTGGAAGCTCACCGCAGTGCCAACGTGCGTGATCTCAACGCGCGTTTGACTGAGCTCACTAACCAACTCGATGCTGAGATGATGCGTGCTGAAGAGCTGAATCAACTGCTAAAGGCCAACGGTATCATCATCAAGCTTGTTGATGAGATGAGCATTCCGCAACTGGAACAGTTCAAGGTGGCGTTGGAAGAGCTGAAAAGGAGCGTCATCACCCGCCAATCTGAGATGAATCACATTCTTAATGCTGTTAATTACCCAGTGCCACCTGTTACGGTGCTCCAGAACTTTCTGCTGAACAATGCTCGTGAATTCGATGGCAACATGATGAATCGTTTTGGTTTTAACAACATGGGAGGATATGGTCCTGATGGGTTCTATTGA 639 0.4757 MSSLIKRSNGRRKVEMKKMMNESNLQVTFSKRRIGLFKKASELSTLCGAEVALIIFSPGDKVFSFGHPNVNALIHRYLMGGPPQSLVEAHRSANVRDLNARLTELTNQLDAEMMRAEELNQLLKANGIIIKLVDEMSIPQLEQFKVALEELKRSVITRQSEMNHILNAVNYPVPPVTVLQNFLLNNAREFDGNMMNRFGFNNMGGYGPDGFY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00097 212 Coils Coil 95 126 - -
Gabi1257g00097 212 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Gabi1257g00097 212 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Gabi1257g00097 212 Gene3D - 21 92 IPR036879 GO:0003677|GO:0046983
Gabi1257g00097 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Gabi1257g00097 212 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
Gabi1257g00097 212 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Gabi1257g00097 212 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Gabi1257g00097 212 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Gabi1257g00097 212 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Gabi1257g00097 212 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Gabi1257g00097 212 PANTHER MADS BOX PROTEIN 11 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00097 Gabi-Chr1257 834860 835498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00097 4 160 Type I MADS-box Gene Family AT5G60440 50.000 1.45e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1257g00097 SRF-TF 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00097 - - gmx:100780445 202.986