Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00080 ATGGAAAAAGCAACAGCAACAGTAAGGGTGACAGCTACTCACAGCAAGTGCATCAAATTCCTATGGGGCTTGATTCTCCTATTGGCTCAATCCAACTCAGTTGCATCAAATGCCATCGTCAAGAGCTTACCGGGCTTCCCTGGCGAGCTACCATTCCTACTTGAAACTGGGTACATTGGAGTAGGAGAACTAGATGAAGAGGTTCAGCTATTTTATTACTTCATTGAATCGGAGGGGCAGCCAGCAACTGATCCACTTGTGCTTTGGCTCACTGGAGGCCCTGGTTGCTCAGCTCTCTCTGGTCTCATGTATGAAGTTGGTCCACTAGGTTTCGACTACAAAAGGTCTTGTGAGATACAGACACCAGTTTTAGTGTTGAACGACTACTCTTGGACTAAGGTTGCCAACATTATTTTCTTGGATGCATCAGTTGGCACTGGATTTTCATATGCAAAAACTTCAGGGGGATACAACACTAGTGATGAAAAATCAACTGCAGACACTTACATGTTTCTGAGAAAGTGGCTTCTGGTTCACCCAAAATTTCAAAAAAATCCTGTCTACATTGCTGGTGATTCATATTCCGGTATCGCTGTTCCAGTCATTGTCAAGAAAATATCTGATGGTAACAAAGCTGGAAACTTACCACAAATTAATCTCAAAGGTTATGTTCTAGGGAACCCATATACCGATAATCAATATGATTTAAACGCAAGAGTTAACTTTGCCTACAGAGTTGGACTTCTATCTGATGACCTCTATGAGGAAACTAAATTTGATTGTCATGGAGAGTTTGCTTTCCCAAATAAAAGTGATGCTGGATGTATTGAACATCTTGAGATGGTCAATCAGTGCCTAAAAGACATAAACCCTCCCATGGTATTGGAACCATTATGTAGCTCTCTCAATACAAAGCCAAACAAGCTCAACTCTGGTTCAAGCCATCCTGGGGTTAATGTCTCAGATTCACTCCTTTCAGAAGTTAATCCTATTGGGCGATGGTGCAGGGATTATAATTATATCTTCATAAACATCTGGGCTAATGACAAAGTAGTACAAGAAGCTCTGCATGTTAGAATTGGAACTATTAAAGAGTGGGACAGGTGCAATAGAAGCTTATCTTATGTGGAAGACATAAGAAGTAGCCTTGATTATCATCGAAACTTAACCAGCGAAGACCTTAGAGCTATCGTTTACAGTGGAGATCATGATATGGTTATTCCATATGTGGGCACCGAGGAATGGATACGATCTCTGAATTTGAAAGTTCCTTCTGATGGTGAGTGGAGGCCATGGTTTGTCGATGGACAAGTTGCAGGTTATACAGAGATGTACAGAGAGAAAAAGTACAGCTTAACATTTGCTACTGTAAAGGGAGGAGGTCACACAGCTCCAGAGTACAAGCCCAAGGAATGCTTTGACATGATTAGTAGATGGTTTGCTTATTACTTTCTTTAG 1458 0.4129 MEKATATVRVTATHSKCIKFLWGLILLLAQSNSVASNAIVKSLPGFPGELPFLLETGYIGVGELDEEVQLFYYFIESEGQPATDPLVLWLTGGPGCSALSGLMYEVGPLGFDYKRSCEIQTPVLVLNDYSWTKVANIIFLDASVGTGFSYAKTSGGYNTSDEKSTADTYMFLRKWLLVHPKFQKNPVYIAGDSYSGIAVPVIVKKISDGNKAGNLPQINLKGYVLGNPYTDNQYDLNARVNFAYRVGLLSDDLYEETKFDCHGEFAFPNKSDAGCIEHLEMVNQCLKDINPPMVLEPLCSSLNTKPNKLNSGSSHPGVNVSDSLLSEVNPIGRWCRDYNYIFINIWANDKVVQEALHVRIGTIKEWDRCNRSLSYVEDIRSSLDYHRNLTSEDLRAIVYSGDHDMVIPYVGTEEWIRSLNLKVPSDGEWRPWFVDGQVAGYTEMYREKKYSLTFATVKGGGHTAPEYKPKECFDMISRWFAYYFL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00080 485 ProSitePatterns Serine carboxypeptidases, histidine active site. 452 469 IPR033124 GO:0004185
Gabi1257g00080 485 Pfam Serine carboxypeptidase 44 480 IPR001563 GO:0004185|GO:0006508
Gabi1257g00080 485 SUPERFAMILY alpha/beta-Hydrolases 40 481 IPR029058 -
Gabi1257g00080 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 469 IPR001563 GO:0004185|GO:0006508
Gabi1257g00080 485 Gene3D alpha/beta hydrolase 49 483 IPR029058 -
Gabi1257g00080 485 FunFam Serine carboxypeptidase-like 19 33 305 - -
Gabi1257g00080 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Gabi1257g00080 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Gabi1257g00080 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Gabi1257g00080 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Gabi1257g00080 485 FunFam Carboxypeptidase 334 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00080 Gabi-Chr1257 703734 712358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00080 346 481 Calmodulin-binding Proteins AT2G22960 52.206 1.13e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00080 K16296 - jre:108983123 597.816