Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00061 ATGGAGCCTGCTGAGTTGATTTCTGAAGAATGGAGTTCTCTTAGTGGACTCTACACAGCTGAGGAAGCTCACTTCATGACTCAGTTGCTTGGCGGTAACTATTCCGTTTCAGTCCCAGAGGATCTCTATGGAAGTTCAAGTTTTGATGTTCCATTAATTGGCCATGAATCTACAATAGTGAGCGTGACAGGAATCAATAACAATTCATATTTTCCTTCAAAAGCTGCTGCTAATAGTAATACTAATATTTTCAGTTTCTCGCATGGGAGTAGCTCCACTACTGATGGTGGTGGAACCTACTCCTTTGGCTCCATGTCCATGGGTTTTTGCTTGGGGGATGCCAAAATTAGTCCACATAGTTTTCTAAGGAATGACAACTCAAGCCAACATATAGATGAAGAGTCAGGTCTACACCCAGAAAACAATTCTCAGGATAACAGGGTTTTTGATCCCGAGGTAGAGGATAGAAGTTGCAACCCAGCAAAAAGATTTAAGAGCTCAATGGAGGTCTCAAAGAACAGCAGGAAGAATGGTAAGTCAAAGCTGAATCCAAAATCTGCTTCAATGAGCAATAATAATGAAGAGGATAGAAGTGCTTGTCTAAAGGGACGGAGCTCAAGCAGTTGCTTCTCAGAGGATGACTCTAATGCTTCTGTGGGGCTAACTAGAGAGGAGTCTTCAAGCCTGAGCCCAAAAGATCCCGCAATTCTCAAATTAAATTCCAAATCAAGAGCTGACAAATGTCCTGCCACCGATTCACAGAGCCTTTATGCAAGAAGGAGAAGACAAAGAATAAATGAAAGGTTGAAAATCCTACAAAATCTTGTCCCTAATGGAACCAAGGTGGATATCAGCACCATGCTCGAGGAAGCTGTACAGTATGTGAAGTTTTTGCAACTCCAAATTAAGCTTCTGAGTTCTGACGATCTGTGGATGTATGCTCCCATTGCTTTCAATGGAATAAACATTGGACTCGACCTCAATATTACTCCAAGCAAACAACCTTAG 1008 0.4187 MEPAELISEEWSSLSGLYTAEEAHFMTQLLGGNYSVSVPEDLYGSSSFDVPLIGHESTIVSVTGINNNSYFPSKAAANSNTNIFSFSHGSSSTTDGGGTYSFGSMSMGFCLGDAKISPHSFLRNDNSSQHIDEESGLHPENNSQDNRVFDPEVEDRSCNPAKRFKSSMEVSKNSRKNGKSKLNPKSASMSNNNEEDRSACLKGRSSSSCFSEDDSNASVGLTREESSSLSPKDPAILKLNSKSRADKCPATDSQSLYARRRRQRINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAFNGINIGLDLNITPSKQP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00061 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 315 IPR036638 GO:0046983
Gabi1257g00061 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Gabi1257g00061 335 FunFam Basic helix-loop-helix transcription factor 250 307 - -
Gabi1257g00061 335 MobiDBLite consensus disorder prediction 121 234 - -
Gabi1257g00061 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 104 311 - -
Gabi1257g00061 335 MobiDBLite consensus disorder prediction 180 229 - -
Gabi1257g00061 335 Gene3D - 249 307 IPR036638 GO:0046983
Gabi1257g00061 335 Pfam Helix-loop-helix DNA-binding domain 259 299 IPR011598 GO:0046983
Gabi1257g00061 335 CDD bHLH_AtIND_like 250 312 - -
Gabi1257g00061 335 SMART finulus 255 304 IPR011598 GO:0046983
Gabi1257g00061 335 MobiDBLite consensus disorder prediction 126 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00061 Gabi-Chr1257 556557 557965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00061 10 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.237 3.42e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1257g00061 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00061 - - pcin:129292046 323.553