LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1257g00059	ATGACATCAGTGCTACCACCGCCGGCGCCCGGCCGAGAGCTCTCTAACCCTCCGTCCGATGGCATCTCCAACCTTCGCTTCTCCAACCACAGCGATCACCTTCTCGTCTCTTCTTGGGACAAGAGCGTGCGATTGTACGATGCGAGCGCAAATGTCCTCAGAGGAGAGTTCATGCATGGTGGACCCGTCCTTGACTGTTGCTTCCATGACGATTCTTCCGGATTCAGTGCCGCCGCCGATAACACTGTCAGGCGGCTCGTTTTCAGCTCTAACAAGGAGGATATTTTGGGAAGGCATGATGCACCTGTTCGTTGTGTCGAGTACTCCTATGCAGCAGGGCAATTGATCACTGGAAGTTGGGACAAAACTCTAAAATGTTGGGACCCTAGAGGTGCAAGCGGGCAAGAGCGTACCCTTGTTGGGACATATCCACAACCTGAGCGTGTCTACTCTCTATCTCTTGTTGGACATCGGCTAGTTGTAGCAACAGCTGGAAGACATGTTAATATTTATGATTTGAGGAACATGTCTCAACCGGAGCAACGAAGGGAATCTTCTTTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGTCGGGTTGCAATGGAATTCTTTGACCTCTCCGAGACCACCCAAGCAAAGAAGTATGCTTTTAAGTGTCACAGGAAATCTGAAGCTGGAAGGGACATTGTCTATCCTGTAAATGCCATGGCATTCCACCCCATATATGGTACATTTGCCACAGGAGGCTGTGACGGTTATGTTAATGTATGGGATGGAAACAACAAGAAGCGGCTGTACCAGTATTCAAAATATCCAACAAGCGTTGCTGCACTTTCATTTAGCAGAGATGGACGCCTCTTGGCTGTTGCATCAAGTTACACATTTGAAGAGGGGCCTAAACCCCATGAGCAAGATGCTATCTACGTTCGTAGTGTGAACGAGATAGAGGTCAAGCCGAAACCCAAAGTCTATCCCAATCCTTCATCGTGA	1029	0.4849	MTSVLPPPAPGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSETTQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKPHEQDAIYVRSVNEIEVKPKPKVYPNPSS	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1257g00059	342	FunFam	Mitotic checkpoint protein bub3, putative	8	335	-	-
	Gabi1257g00059	342	ProSiteProfiles	Trp-Asp (WD) repeats profile.	96	128	IPR001680	GO:0005515
	Gabi1257g00059	342	MobiDBLite	consensus disorder prediction	1	22	-	-
	Gabi1257g00059	342	SUPERFAMILY	WD40 repeat-like	17	305	IPR036322	GO:0005515
	Gabi1257g00059	342	Gene3D	-	9	336	IPR015943	GO:0005515
	Gabi1257g00059	342	Pfam	WD domain, G-beta repeat	20	47	IPR001680	GO:0005515
	Gabi1257g00059	342	Pfam	WD domain, G-beta repeat	96	128	IPR001680	GO:0005515
	Gabi1257g00059	342	Pfam	WD domain, G-beta repeat	230	271	IPR001680	GO:0005515
	Gabi1257g00059	342	ProSiteProfiles	Trp-Asp (WD) repeats profile.	246	280	IPR001680	GO:0005515
	Gabi1257g00059	342	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	96	128	-	-
	Gabi1257g00059	342	SMART	WD40_4	50	87	IPR001680	GO:0005515
	Gabi1257g00059	342	SMART	WD40_4	7	47	IPR001680	GO:0005515
	Gabi1257g00059	342	SMART	WD40_4	136	172	IPR001680	GO:0005515
	Gabi1257g00059	342	SMART	WD40_4	89	128	IPR001680	GO:0005515
	Gabi1257g00059	342	SMART	WD40_4	223	271	IPR001680	GO:0005515
	Gabi1257g00059	342	PRINTS	G protein beta WD-40 repeat signature	258	272	IPR020472	-
	Gabi1257g00059	342	PRINTS	G protein beta WD-40 repeat signature	34	48	IPR020472	-
	Gabi1257g00059	342	PRINTS	G protein beta WD-40 repeat signature	115	129	IPR020472	-
	Gabi1257g00059	342	PANTHER	MRNA EXPORT FACTOR AND BUB3	12	328	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1257g00059	Gabi-Chr1257	534818	538773	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1257g00059	96	304	U-box Gene Family	AT2G33340	24.413	1.81e-06	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1257g00059	K02180		-	cave:132179947	679.093