Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00058 ATGGCTTTGGAGGCTCTGAATTCTCCTACCCCATTCCCCTACGAACAAGAGGAGGTTGACCTTGAGAGCGTTGAGCCATGGACCAAGAGGAAGCGCTCAAAACGATCCCGTTTCGAGATCCCATCAAATCCAACAGAGGAAGAGTACCTGGCTCTCTGCCTCATCATGCTCGCCCACAGCGGCAACAACAACACTTCTCCGCACCTGAATATTCATCACGACACACAAACACAAACACAACCACAGCCACAACCTATCACTAAGCAGACTCATAGATGCACCGTTTGCAACAAAGCCTTTCAATCTTACCAAGCACTCGGAGGCCACAAGGCCAGCCACCGCAAGTCCTCGTCGACCGAAGCCTCCAACTCTACTTCTACCGCCGCCGCCTCCGCCGCCGGAAGGATGCACGAGTGCTCCATTTGTCACAAGGCTTTCCCGACGGGTCAGGCTCTGGGCGGCCACAAGCGATGCCACTATGAAGGCGGCAACAACACCTCCTCTGAGGCTACCGCCTCCACCCACAGCCACCGTCCTTTTGACTTGAATTTGCCGGCAACCCTCACCGACTTCTGGGTCGGCGGCGGTGAACAAGAGGTGGAAGGCCCTTTGCCGGAAACAGCCAAGAAGCCGCGTTTGTCTTTGGGTGTAGCTTCCTCAGAGTCCCACAGAATTCGTTGA 681 0.5551 MALEALNSPTPFPYEQEEVDLESVEPWTKRKRSKRSRFEIPSNPTEEEYLALCLIMLAHSGNNNTSPHLNIHHDTQTQTQPQPQPITKQTHRCTVCNKAFQSYQALGGHKASHRKSSSTEASNSTSTAAASAAGRMHECSICHKAFPTGQALGGHKRCHYEGGNNTSSEATASTHSHRPFDLNLPATLTDFWVGGGEQEVEGPLPETAKKPRLSLGVASSESHRIR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00058 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Gabi1257g00058 226 MobiDBLite consensus disorder prediction 197 226 - -
Gabi1257g00058 226 MobiDBLite consensus disorder prediction 1 38 - -
Gabi1257g00058 226 Gene3D Classic Zinc Finger 88 159 - -
Gabi1257g00058 226 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Gabi1257g00058 226 Pfam C2H2-type zinc finger 91 115 - -
Gabi1257g00058 226 Pfam C2H2-type zinc finger 137 160 - -
Gabi1257g00058 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Gabi1257g00058 226 SUPERFAMILY beta-beta-alpha zinc fingers 90 159 IPR036236 -
Gabi1257g00058 226 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Gabi1257g00058 226 SMART c2h2final6 91 113 IPR013087 -
Gabi1257g00058 226 SMART c2h2final6 137 159 IPR013087 -
Gabi1257g00058 226 MobiDBLite consensus disorder prediction 107 129 - -
Gabi1257g00058 226 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 31 186 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00058 Gabi-Chr1257 518760 519853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00058 1 217 C2H2 Transcription Factor Family AT1G27730 45.902 2.74e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1257g00058 zf-C2H2_6 7.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00058 - - aprc:113872812 240.736