Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00052 ATGCTACGTTTATGCGGCCGCTCGCTGGAGCGTTGCTTTGGATGGCAACGCTGCGACGCTCTTCTGTGGCACTCCGACCTCAAGCCTCACGCCTCCGGCGACTTCTCCATCGCCGTCGTTCAAGCCAACTCTTCTCTCGAGGATCAGAGCCAAGTCTTTACTTCCCCTTCCGCCACTTACATCGGCGTTTACGACGGCCATGGTGGCCCCGAAGCTTCTAGATTCGTCAACAAACGTCTCTTCCCTTATTTGCACAAATTCGCGAGCGAAGAAGGGGGTGTATCTGAGGAAGTGATAAAAAAGGCATTTAGTGCGACGGAGGAGGAATTCATGCATTTGGTGAAGCGATCTTTTGCGATATTCCCGCAGATTGCATCGGTAGGATCGTGCTGTCTGGTGGGTGCAATTTGTGACAATGTATTGTATGTTGCGAACCTGGGAGACTCGAGAGCAGTCCTTGGCAAGAAGAGAAAGAGAATTTCAATTTCAATTTCAGATTCAGATTCAGATGCAGAGACTGAGAGTGTGGTGGCAGAGCGCTTGTCAGTGGATCATAATGTGGGTGTTGAGCAGGTCAGGAAAGAGGTTCAGGCTCTTCATCCTGATGATTCACACATTGTCGTTCATACCCGTGGTGTCTGGAGGATTAAGGGCATTATACAGGTTTCAAGATCTATTGGTGATGTGTATCTCAAGAGACCTGATTTTTACAGAGACCCAATTTTTCAGCAATTTGGTAATCCCATTCCTTTGAAGCGTCCTGTGATGACAGCTGAACCATCAGTCATTATTAGGGAGCTTGAGCCACAAGATTTATTCCTCATATTTGCATCGGATGGCCTTTGGGAACAATTAAGTGATGAAGCTGCTGTTGAGATTGTTTACAAATATCCCAGAGCTGGAATTGCCAAAAGATTAGTACGAGCTGCTCTTGAGGAAGCTGCAAAGAAAAAAGAGATGAGATATGCTGACATAAAGAAAATTGACAAGGGAATAAGACGGCATTTTCATGATGATATCACTGTTATCGTAATCTATCTTGATCACCACAGGGGCTCCTCCAATGGTAGATTTAAGCAGAGTGCTGTTGGCTGCACAACTGCCCCTGTTGACATCTTCTCCCTAAATGAGGATGAAGAGGAACAAAGCATGCTTGGTACCGTTGCATAA 1170 0.4632 MLRLCGRSLERCFGWQRCDALLWHSDLKPHASGDFSIAVVQANSSLEDQSQVFTSPSATYIGVYDGHGGPEASRFVNKRLFPYLHKFASEEGGVSEEVIKKAFSATEEEFMHLVKRSFAIFPQIASVGSCCLVGAICDNVLYVANLGDSRAVLGKKRKRISISISDSDSDAETESVVAERLSVDHNVGVEQVRKEVQALHPDDSHIVVHTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFQQFGNPIPLKRPVMTAEPSVIIRELEPQDLFLIFASDGLWEQLSDEAAVEIVYKYPRAGIAKRLVRAALEEAAKKKEMRYADIKKIDKGIRRHFHDDITVIVIYLDHHRGSSNGRFKQSAVGCTTAPVDIFSLNEDEEEQSMLGTVA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00052 389 Gene3D - 24 355 IPR036457 -
Gabi1257g00052 389 PANTHER PROTEIN PHOSPHATASE 33 348 IPR015655 GO:0004722|GO:0006470
Gabi1257g00052 389 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
Gabi1257g00052 389 SUPERFAMILY PP2C-like 41 349 IPR036457 -
Gabi1257g00052 389 CDD PP2Cc 41 347 IPR001932 -
Gabi1257g00052 389 FunFam Probable protein phosphatase 2C 42 25 355 - -
Gabi1257g00052 389 SMART PP2C_4 24 345 IPR001932 -
Gabi1257g00052 389 ProSiteProfiles PPM-type phosphatase domain profile. 34 347 IPR001932 -
Gabi1257g00052 389 Pfam Protein phosphatase 2C 55 316 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00052 Gabi-Chr1257 475010 476719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00052 19 354 PP2C-type Phosphatase Gene Family AT3G51370 55.233 5.99e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00052 K01102 - gmx:100812137 603.208