Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00023 ATGAGTGAGAGAATGAGGATGGAGGAAGAGGAAGATGAAGTGGTGTCGTGCTCTTCTGATCCCGGTGACGATGATATTGAAAAATCTTTTGATTCCGGGGACAGTGACTATGATATTGAACAATCTTCCTCTCCGCTGGACGAAGAACGCAAATCGCAGAATGTGGAAGCTCTCCTGAGGGGGAACCTGATCGTGAAGAGACAATCGTTGCTACCGCGAGTTCTATCAGTTTCAGGAGCGGCTGTTTGTAGAAAACCCTTTAAGCCTCCATGCTATAAATCTAATGGTTACAATCAAGACCTTACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTCCCGTGGGGCTCTACTACACCTACACCAGTGGTTGTGGCTGAGTTGAACTTGAATGTGCCGCCAATAACTATAAGCCATGTTGATGTTGCTGAGGAGGAGAAACCATCTTTGCCCCCTGGGGTTGATCCTCTAGTATTGTGGCACCCTGAGGATGAGGCTTCTAGTTTGACAACGATAACAGTTGACCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCTCAGGGCTATGTAGTACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCGATCGCATTACTATATACTCTTATTTTTCAAGGGTTTGATGGGAAGCCAATGGTTAGGAAGGCCATCATTGTGACTCCGACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCCACAAGTGGGTTGGAGAAAGAGTTCATCTTGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTGTCTCTGCGATTGAGAATTTTACAAGTCCCCACAGCACTTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAGTTTAGCTCTAGTGACTCGTGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGACCAGACAATAACAAACAAGGCATTGGCTGCTCTTCCATGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTCGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCACAGCAGAAGAGAAGAAGCTTGGTGCTGAACGCACTGCAGAATTAAGTGCCCAAGTTAATCGGTTCATATTAAGAAGGACTAATGCATTATTATCGAATCACTTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCTGACCTCTATAAACATTTTATACAATCCAAAAATGTTAAACAGGCATTTACTGCAGAACTGAAGCAATCAAAGATTTTGGCCCATATATCAGCTCTCAAAAAGTTGTGCAATCATCCGAAGCTCATCTATGATAACATTCGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGATTCTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGCTCATGGACAGGAGGGCATGGAGCGTGGGTTGAGCTGTCCGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCAATTGCGTCAGAGAACAAATGATCGTATTGTCCTTGTCTCAAATTATACTCAGACTCTTGATCTTTTTTCTCAATTGTGTCGGGAACGAAGGTATCCTCACTTGAGACTTGATGGAACTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGTTTTAATGACCTATCTAAGGATGAATTTGTTTTTTTATTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGACTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTACAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACCGATAGCCTTGTGGCACAGGGTAACTTTCTTTCGACAGAGGATCTCCGCAATTTGTTCACTTTTAATGAGAATGTCAAGTCAGAGATTCATGAAAAGATGCAATGTGCTCGGTGTCAAACATATGATGGACCTCAAAGCACTGACGAGAAATATGTAGCCCAATCAACAAAAATTTACAGTGAATCTGATGAGGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCAGGTTGCTTAGAGAATTTAAAAACATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAGATTTAGGTAGTTGGGGCCATCATTTTTTCCCAACTTCCGTACCTGATGCTATCCTTCGGGCTTCAGCCGGTGACGAGGTGACCTTTGTCTTCACAAACCAAGTTAACGGAAAGCTGGTACCGATTGATTCCGTCATCAGTCCAAAGCTACAGCAAAAGGAACCAAATAATGAATTACTCAAGTCAGGGCAGAACATCAAACAAAAATCTGCTCCTTTTTCTTTACATAATAAACTACCCCTGCGATCTGCAAATGCTTCTGGTGTTACTAGTGCGTTATCTTCCTCTCCCAATGCTTGGACGAAGGAAGCACTAAATTCTGTCAGAATTATAAAAAATAACTCAATGAATGTAGCATTTGAGACCGACTATTCTCTTGTAAATAAATTATTACCACAGAAAAGATCATGTCCTGCTAATATCAATGACGATGATTGA 2790 0.4219 MSERMRMEEEEDEVVSCSSDPGDDDIEKSFDSGDSDYDIEQSSSPLDEERKSQNVEALLRGNLIVKRQSLLPRVLSVSGAAVCRKPFKPPCYKSNGYNQDLTRRLSARKRFVPWGSTTPTPVVVAELNLNVPPITISHVDVAEEEKPSLPPGVDPLVLWHPEDEASSLTTITVDPLLVRFLRPHQREGVQFMFDCVSGLCSTPNIHGCILADDMGLGKTLQSIALLYTLIFQGFDGKPMVRKAIIVTPTSLVSNWEAEIHKWVGERVHLVALCESTREDVVSAIENFTSPHSTLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAERTAELSAQVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKQAFTAELKQSKILAHISALKKLCNHPKLIYDNIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAQLRQRTNDRIVLVSNYTQTLDLFSQLCRERRYPHLRLDGTTSISKRQKLVNCFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNFLSTEDLRNLFTFNENVKSEIHEKMQCARCQTYDGPQSTDEKYVAQSTKIYSESDEETSDIGGFAEIAGCLENLKTSEKQVGTPLEEDLGSWGHHFFPTSVPDAILRASAGDEVTFVFTNQVNGKLVPIDSVISPKLQQKEPNNELLKSGQNIKQKSAPFSLHNKLPLRSANASGVTSALSSSPNAWTKEALNSVRIIKNNSMNVAFETDYSLVNKLLPQKRSCPANINDDD 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00023 929 SMART helicmild6 566 650 IPR001650 -
Gabi1257g00023 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 372 IPR014001 -
Gabi1257g00023 929 MobiDBLite consensus disorder prediction 21 35 - -
Gabi1257g00023 929 Gene3D - 422 730 IPR027417 -
Gabi1257g00023 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 422 IPR027417 -
Gabi1257g00023 929 Pfam Helicase conserved C-terminal domain 541 649 IPR001650 -
Gabi1257g00023 929 MobiDBLite consensus disorder prediction 1 51 - -
Gabi1257g00023 929 FunFam DNA repair and recombination protein RAD54 155 421 - -
Gabi1257g00023 929 Gene3D - 157 421 IPR038718 -
Gabi1257g00023 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 815 IPR027417 -
Gabi1257g00023 929 CDD SF2_C_SNF 533 661 - -
Gabi1257g00023 929 Gene3D - 444 713 - -
Gabi1257g00023 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 700 IPR001650 -
Gabi1257g00023 929 Pfam SNF2-related domain 184 490 IPR000330 GO:0005524|GO:0140658
Gabi1257g00023 929 CDD DEXHc_RAD54 181 422 - -
Gabi1257g00023 929 FunFam DNA repair and recombination protein RAD54-like 527 697 - -
Gabi1257g00023 929 SMART ultradead3 177 380 IPR014001 -
Gabi1257g00023 929 PANTHER SNF2/RAD54 FAMILY MEMBER 78 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00023 Gabi-Chr1257 225819 234290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00023 530 708 RAD5 or RAD16-like Gene Family AT5G43530 35.556 9.45e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1257g00023 SNF2_N 9.7e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00023 K10875 - gmx:100781631 1487.63