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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Gabi1257g00022
ATGAGTGAGAGAATGAGGATGGAGGAAGAGGAAGATGAAGTGGTGTCGTGCTCTTCTGATCCCGGTGACGATGATATTGAAAAATCTTTTGATTCCGGGGACAGTGACTATGATATTGAACAATCTTCCTCTCCGCTGGACGAAGAACGCAAATCGCAGAATGTGGAAGCTCTCCTGAGGGGGAACCTGATCGTGAAGAGACAATCGTTGCTACCGCGAGTTCTATCAGTTTCAGGAGCGGCTGTTTGTAGAAAACCCTTTAAGCCTCCATGCTATAAATCTAATGGTTACAATCAAGACCTTACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTCCCGTGGGGCTCTACTACACCTACACCAGTGGTTGTGGCTGAGTTGAACTTGAATGTGCCGCCAATAACTATAAGCCATGTTGATGTTGCTGAGGAGGAGAAACCATCTTTGCCCCCTGGGGTTGATCCTCTAGTATTGTGGCACCCTGAGGATGAGGCTTCTAGTTTGACAACGATAACAGTTGACCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCTCAGGGCTATGTAGTACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCGATCGCATTACTATATACTCTTATTTTTCAAGGGTTTGATGGGAAGCCAATGGTTAGGAAGGCCATCATTGTGACTCCGACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCCACAAGTGGGTTGGAGAAAGAGTTCATCTTGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTGTCTCTGCGATTGAGAATTTTACAAGTCCCCACAGCACTTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAGTTTAGCTCTAGTGACTCGTGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGACCAGACAATAACAAACAAGGCATTGGCTGCTCTTCCATGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTCGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCACAGCAGAAGAGAAGAAGCTTGGTGCTGAACGCACTGCAGAATTAAGTGCCCAAGTTAATCGGTTCATATTAAGAAGGACTAATGCATTATTATCGAATCACTTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCTGACCTCTATAAACATTTTATACAACAGGTTAAACAGGCATTTACTGCAGAACTGAAGCAATCAAAGATTTTGGCCCATATATCAGCTCTCAAAAAGTTGTGCAATCATCCGAAGCTCATCTATGATAACATTCGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGATTCTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGCTCATGGACAGGAGGGCATGGAGCGTGGGTTGAGCTGTCCGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCAATTGCGTCAGAGAACAAATGATCGTATTGTCCTTGTCTCAAATTATACTCAGACTCTTGATCTTTTTTCTCAATTGTGTCGGGAACGAAGGTATCCTCACTTGAGACTTGATGGAACTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGTTTTAATGACCTATCTAAGGATGAATTTGTTTTTTTATTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGACTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTACAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACCGATAGCCTTGTGGCACAGGGTAACTTTCTTTCGACAGAGGATCTCCGCAATTTGTTCACTTTTAATGAGAATGTCAAGTCAGAGATTCATGAAAAGATGCAATGTGCTCGGTGTCAAACATATGATGGACCTCAAAGCACTGACGAGAAATATGTAGCCCAATCAACAAAAATTTACAGTGAATCTGATGAGGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCAGGTTGCTTAGAGAATTTAAAAACATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAGATTTAGGTAGTTGGGGCCATCATTTTTTCCCAACTTCCGTACCTGATGCTATCCTTCGGGCTTCAGCCGGTGACGAGGTGACCTTTGTCTTCACAAACCAAGTTAACGGAAAGCTGGTACCGATTGATTCCGTCATCAGTCCAAAGCTACAGCAAAAGGAACCAAATAATGAATTACTCAAGTCAGGGCAGAACATCAAACAAAAATCTGCTCCTTTTTCTTTACATAATAAACTACCCCTGCGATCTGCAAATGCTTCTGGTGTTACTAGTGCGTTATCTTCCTCTCCCAATGCTTGGACGAAGGAAGCACTAAATTCTGTCAGAATTATAAAAAATAACTCAATGAATGTAGCATTTGAGACCGACTATTCTCTTGTAAATAAATTATTACCACAGAAAAGATCATGTCCTGCTAATATCAATGACGATGATTGA
2784
0.4228
MSERMRMEEEEDEVVSCSSDPGDDDIEKSFDSGDSDYDIEQSSSPLDEERKSQNVEALLRGNLIVKRQSLLPRVLSVSGAAVCRKPFKPPCYKSNGYNQDLTRRLSARKRFVPWGSTTPTPVVVAELNLNVPPITISHVDVAEEEKPSLPPGVDPLVLWHPEDEASSLTTITVDPLLVRFLRPHQREGVQFMFDCVSGLCSTPNIHGCILADDMGLGKTLQSIALLYTLIFQGFDGKPMVRKAIIVTPTSLVSNWEAEIHKWVGERVHLVALCESTREDVVSAIENFTSPHSTLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAERTAELSAQVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQQVKQAFTAELKQSKILAHISALKKLCNHPKLIYDNIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAQLRQRTNDRIVLVSNYTQTLDLFSQLCRERRYPHLRLDGTTSISKRQKLVNCFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNFLSTEDLRNLFTFNENVKSEIHEKMQCARCQTYDGPQSTDEKYVAQSTKIYSESDEETSDIGGFAEIAGCLENLKTSEKQVGTPLEEDLGSWGHHFFPTSVPDAILRASAGDEVTFVFTNQVNGKLVPIDSVISPKLQQKEPNNELLKSGQNIKQKSAPFSLHNKLPLRSANASGVTSALSSSPNAWTKEALNSVRIIKNNSMNVAFETDYSLVNKLLPQKRSCPANINDDD
927
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Gabi1257g00022
927
ProSiteProfiles
Superfamilies 1 and 2 helicase C-terminal domain profile.
537
698
IPR001650
-
Gabi1257g00022
927
FunFam
DNA repair and recombination protein RAD54-like
525
695
-
-
Gabi1257g00022
927
ProSiteProfiles
Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
199
372
IPR014001
-
Gabi1257g00022
927
MobiDBLite
consensus disorder prediction
21
35
-
-
Gabi1257g00022
927
SUPERFAMILY
P-loop containing nucleoside triphosphate hydrolases
426
813
IPR027417
-
Gabi1257g00022
927
Pfam
Helicase conserved C-terminal domain
539
647
IPR001650
-
Gabi1257g00022
927
CDD
SF2_C_SNF
531
659
-
-
Gabi1257g00022
927
Gene3D
-
422
728
IPR027417
-
Gabi1257g00022
927
Pfam
SNF2-related domain
184
488
IPR000330
GO:0005524|GO:0140658
Gabi1257g00022
927
SMART
helicmild6
564
648
IPR001650
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Gabi1257g00022
Gabi-Chr1257
225819
234290
Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Gabi1257g00022
205
706
RAD5 or RAD16-like Gene Family
AT1G02670
25.184
5.88e-30
125
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
SNF2
Gabi1257g00022
SNF2_N
7.3e-55
CL0023
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Gabi1257g00022
K10875
-
gmx:100781631
1476.84
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