Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00022 ATGAGTGAGAGAATGAGGATGGAGGAAGAGGAAGATGAAGTGGTGTCGTGCTCTTCTGATCCCGGTGACGATGATATTGAAAAATCTTTTGATTCCGGGGACAGTGACTATGATATTGAACAATCTTCCTCTCCGCTGGACGAAGAACGCAAATCGCAGAATGTGGAAGCTCTCCTGAGGGGGAACCTGATCGTGAAGAGACAATCGTTGCTACCGCGAGTTCTATCAGTTTCAGGAGCGGCTGTTTGTAGAAAACCCTTTAAGCCTCCATGCTATAAATCTAATGGTTACAATCAAGACCTTACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTCCCGTGGGGCTCTACTACACCTACACCAGTGGTTGTGGCTGAGTTGAACTTGAATGTGCCGCCAATAACTATAAGCCATGTTGATGTTGCTGAGGAGGAGAAACCATCTTTGCCCCCTGGGGTTGATCCTCTAGTATTGTGGCACCCTGAGGATGAGGCTTCTAGTTTGACAACGATAACAGTTGACCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCTCAGGGCTATGTAGTACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCGATCGCATTACTATATACTCTTATTTTTCAAGGGTTTGATGGGAAGCCAATGGTTAGGAAGGCCATCATTGTGACTCCGACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCCACAAGTGGGTTGGAGAAAGAGTTCATCTTGTTGCTCTATGTGAAAGCACAAGAGAAGATGTTGTCTCTGCGATTGAGAATTTTACAAGTCCCCACAGCACTTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAGTTTAGCTCTAGTGACTCGTGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGACCAGACAATAACAAACAAGGCATTGGCTGCTCTTCCATGCAAACGTAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTCGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCACAGCAGAAGAGAAGAAGCTTGGTGCTGAACGCACTGCAGAATTAAGTGCCCAAGTTAATCGGTTCATATTAAGAAGGACTAATGCATTATTATCGAATCACTTGCCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCTGACCTCTATAAACATTTTATACAACAGGTTAAACAGGCATTTACTGCAGAACTGAAGCAATCAAAGATTTTGGCCCATATATCAGCTCTCAAAAAGTTGTGCAATCATCCGAAGCTCATCTATGATAACATTCGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGATTCTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGCTCATGGACAGGAGGGCATGGAGCGTGGGTTGAGCTGTCCGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCAATTGCGTCAGAGAACAAATGATCGTATTGTCCTTGTCTCAAATTATACTCAGACTCTTGATCTTTTTTCTCAATTGTGTCGGGAACGAAGGTATCCTCACTTGAGACTTGATGGAACTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGTTTTAATGACCTATCTAAGGATGAATTTGTTTTTTTATTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGACTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTACAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACCGATAGCCTTGTGGCACAGGGTAACTTTCTTTCGACAGAGGATCTCCGCAATTTGTTCACTTTTAATGAGAATGTCAAGTCAGAGATTCATGAAAAGATGCAATGTGCTCGGTGTCAAACATATGATGGACCTCAAAGCACTGACGAGAAATATGTAGCCCAATCAACAAAAATTTACAGTGAATCTGATGAGGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCAGGTTGCTTAGAGAATTTAAAAACATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAGATTTAGGTAGTTGGGGCCATCATTTTTTCCCAACTTCCGTACCTGATGCTATCCTTCGGGCTTCAGCCGGTGACGAGGTGACCTTTGTCTTCACAAACCAAGTTAACGGAAAGCTGGTACCGATTGATTCCGTCATCAGTCCAAAGCTACAGCAAAAGGAACCAAATAATGAATTACTCAAGTCAGGGCAGAACATCAAACAAAAATCTGCTCCTTTTTCTTTACATAATAAACTACCCCTGCGATCTGCAAATGCTTCTGGTGTTACTAGTGCGTTATCTTCCTCTCCCAATGCTTGGACGAAGGAAGCACTAAATTCTGTCAGAATTATAAAAAATAACTCAATGAATGTAGCATTTGAGACCGACTATTCTCTTGTAAATAAATTATTACCACAGAAAAGATCATGTCCTGCTAATATCAATGACGATGATTGA 2784 0.4228 MSERMRMEEEEDEVVSCSSDPGDDDIEKSFDSGDSDYDIEQSSSPLDEERKSQNVEALLRGNLIVKRQSLLPRVLSVSGAAVCRKPFKPPCYKSNGYNQDLTRRLSARKRFVPWGSTTPTPVVVAELNLNVPPITISHVDVAEEEKPSLPPGVDPLVLWHPEDEASSLTTITVDPLLVRFLRPHQREGVQFMFDCVSGLCSTPNIHGCILADDMGLGKTLQSIALLYTLIFQGFDGKPMVRKAIIVTPTSLVSNWEAEIHKWVGERVHLVALCESTREDVVSAIENFTSPHSTLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNKALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAERTAELSAQVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQQVKQAFTAELKQSKILAHISALKKLCNHPKLIYDNIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAQLRQRTNDRIVLVSNYTQTLDLFSQLCRERRYPHLRLDGTTSISKRQKLVNCFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNFLSTEDLRNLFTFNENVKSEIHEKMQCARCQTYDGPQSTDEKYVAQSTKIYSESDEETSDIGGFAEIAGCLENLKTSEKQVGTPLEEDLGSWGHHFFPTSVPDAILRASAGDEVTFVFTNQVNGKLVPIDSVISPKLQQKEPNNELLKSGQNIKQKSAPFSLHNKLPLRSANASGVTSALSSSPNAWTKEALNSVRIIKNNSMNVAFETDYSLVNKLLPQKRSCPANINDDD 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00022 927 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 537 698 IPR001650 -
Gabi1257g00022 927 FunFam DNA repair and recombination protein RAD54-like 525 695 - -
Gabi1257g00022 927 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 372 IPR014001 -
Gabi1257g00022 927 MobiDBLite consensus disorder prediction 21 35 - -
Gabi1257g00022 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 813 IPR027417 -
Gabi1257g00022 927 Pfam Helicase conserved C-terminal domain 539 647 IPR001650 -
Gabi1257g00022 927 CDD SF2_C_SNF 531 659 - -
Gabi1257g00022 927 Gene3D - 422 728 IPR027417 -
Gabi1257g00022 927 Pfam SNF2-related domain 184 488 IPR000330 GO:0005524|GO:0140658
Gabi1257g00022 927 SMART helicmild6 564 648 IPR001650 -
Gabi1257g00022 927 MobiDBLite consensus disorder prediction 1 51 - -
Gabi1257g00022 927 Gene3D - 157 421 IPR038718 -
Gabi1257g00022 927 Gene3D - 444 711 - -
Gabi1257g00022 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 422 IPR027417 -
Gabi1257g00022 927 FunFam DNA repair and recombination protein RAD54 155 421 - -
Gabi1257g00022 927 CDD DEXHc_RAD54 181 422 - -
Gabi1257g00022 927 PANTHER SNF2/RAD54 FAMILY MEMBER 78 823 - -
Gabi1257g00022 927 SMART ultradead3 177 380 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00022 Gabi-Chr1257 225819 234290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00022 205 706 RAD5 or RAD16-like Gene Family AT1G02670 25.184 5.88e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1257g00022 SNF2_N 7.3e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00022 K10875 - gmx:100781631 1476.84