Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00020 ATGGCTGTAGTTAAAAAACCCAGCGACAGGGACAGGCCTTCAAAGGGCAAGAGAGTTACGCTACCTAAAGCAAAGTTCTTTCGGAAAAAGACACTGGAACTCAACCCAGCTGATCCTCTAAAGCAAACTATCAGTCGTAATCCACAAAGAAGACCAAAGAGAGGGAGCGTTGATAGTGTATGTAATACTTCTGAAGCTCAGTTTACTGCTTACCTACGTGCAAAAGAGGTTCAGGCTAACCTATCTCCTGAATATCCAAGCCTTCTTAAGTGCATGCTTCGGTCTCATGTAACAGGGGGATTTTGGCTAGGTCTTCCTAAAAAATTCTGTCAGTTGCATTTGCCTAAGGCTGATACTATTATTGCTTTGGAAGATGAAAATGGGGAACTATATGAAACCAAATATCTTGCTCAAAAGGTGGGCCTAAGTGGTGGATGGAGGGGGTTTTCCTTAGCTCATAACTTACTCGAGATGGATGTTCTAATATTCCACTTGGTCCAGCCTTCCAAATTTAAGGTGTACATCATAAGATCTCAGGGGTCTGATGAAATGGATGGTGCTCTTGGCCTTCTTAAGTTAGATGACTGCAGAAAAGAAAAGGACGAAGTGGATGGTGCTCTCGGTAAGTGTGACGCTACTCAAGGAAATGACTCAAATAATAGCGGGATGATTTTTGGTGCTCACGTATCTCAATCTGATCAGCTTGAAAATACTAGTAAAGATTTTTGCTCACAAGTTTGGGATGGAATTAGATTTTCAGAATCTGTTATCAGTTTTGAAGAAGTTACTGGTAGCGAGAAATTCAGCATTGTGGTGAATGGTTTGGTTATTGATTCAGAGCTCTCCATGTACCTTCGGACCAAGTATTACGAGCTCTGTTGCAGCCAGAGATCGTTTCTTCATGACCATCTTCTTGGGGGTCTTAACTCTAAACTGGTGGCTGGAATAATTTCTGAGACTATTAATATTGCTGATGCCATTAAAGCCACTAAGCTTACAACCTCTCCAGAGAGTTTTTTAACATGGGACAAGACTCTGAAAGCCTTTGAGGCCATGGGCATGAATGTCAGCTTCTTGCTTATTCGGCTACACCAGCTTATGAAACTAGCTTTGAAATCAGAGAGGTACAAAGAGTCAAGACTTGAACGAGACCATGCTAAAGTGGACTTGAAAGCTCTAGAGGAAAAACTTGTGCAAGTAAAACAGACAATAAATAGACTTGATGAAGAGATTGGCATACAAGATATGAACCCTGAGAGCCTCGAAACTACGTTTCAAAAACTGGCTAGTGCTCCTTGGTGA 1302 0.4171 MAVVKKPSDRDRPSKGKRVTLPKAKFFRKKTLELNPADPLKQTISRNPQRRPKRGSVDSVCNTSEAQFTAYLRAKEVQANLSPEYPSLLKCMLRSHVTGGFWLGLPKKFCQLHLPKADTIIALEDENGELYETKYLAQKVGLSGGWRGFSLAHNLLEMDVLIFHLVQPSKFKVYIIRSQGSDEMDGALGLLKLDDCRKEKDEVDGALGKCDATQGNDSNNSGMIFGAHVSQSDQLENTSKDFCSQVWDGIRFSESVISFEEVTGSEKFSIVVNGLVIDSELSMYLRTKYYELCCSQRSFLHDHLLGGLNSKLVAGIISETINIADAIKATKLTTSPESFLTWDKTLKAFEAMGMNVSFLLIRLHQLMKLALKSERYKESRLERDHAKVDLKALEEKLVQVKQTINRLDEEIGIQDMNPESLETTFQKLASAPW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00020 433 MobiDBLite consensus disorder prediction 37 58 - -
Gabi1257g00020 433 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1257g00020 433 Pfam B3 DNA binding domain 89 178 IPR003340 GO:0003677
Gabi1257g00020 433 ProSiteProfiles B3 DNA-binding domain profile. 88 179 IPR003340 GO:0003677
Gabi1257g00020 433 Coils Coil 376 410 - -
Gabi1257g00020 433 SUPERFAMILY DNA-binding pseudobarrel domain 81 178 IPR015300 -
Gabi1257g00020 433 CDD B3_DNA 86 177 IPR003340 GO:0003677
Gabi1257g00020 433 MobiDBLite consensus disorder prediction 1 18 - -
Gabi1257g00020 433 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 37 179 IPR044837 -
Gabi1257g00020 433 Gene3D - 68 180 IPR015300 -
Gabi1257g00020 433 SMART B3_2 88 179 IPR003340 GO:0003677
Gabi1257g00020 433 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00020 Gabi-Chr1257 215425 219683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00020 57 177 B3 DNA Binding Superfamily AT3G19184 52.893 5.23e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi1257g00020 B3 5.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00020 - - ccaj:109816480 556.214