Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1257g00003 ATGGTGAAGGAAACCGAATACTATGACGTACTGGGTGTCAGTCCAACAGCGTCGGAATCCGAGATTAAGAAGGCTTATTACATGAAGGCACGACAAGTGCATCCGGATAAAAACCCAAATGACCCTCTTGCTGCACAAAATTTTCAGGTTTTGGGTGAGGCTTACCAAGTTCTGAGTGATCCAACTCAAAGGCAAGCTTACGATGCTCATGGGAAATCAGGAATCTCGACTGAAGCAATTATTGATCCTGCAGCAATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAGGAATACATAGGCCAGTTAGCCATGGCATCAATGGCATCAATGGACATTTTTACTGAAGGGGAACAATTTGATACTAAAAAGTTGCAAGAAAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCAGAGATATTGAAAAGTAGACTCAACCAATATGTCCAAGGAAACAAAGAGGACTTTGTTAATCATGCAGAAGCCGAAGTAACCCGGCTATCCAAAGCAGCTTATGGGGTTGATATGTTGAATACCATTGGCTACATATACGCAAGGCAGGCAGCAAAAGAACTAGGCAAGAAAGCAATTTATCTGGGTGTGCCTTTTGTAGCTGAGTGGTTTAGAAACAAAGGGCACTTTATCAAATCCCAAGTTACAGCGGCAACAGGGGCAATTGCTTTGATCCAACTGCAGGAGGACATGAAAAAACAACTAAGTACAGAAGGGAACTATACTGAAGAAGAGCTTGAAGAATACATGCAATCTCACAAGAAACTGATGATTGACTCTTTGTGGAAGCTTAATGTGGCTGACATTGAGGCGACTCTTTCCCGCGTTTGTCAAATGGTTCTTCAAGACAACAATGCCAAGAAAGAAGAACTCCGAGTACGAGCAAAAGGGTTGAAAACTCTCGGCAAAATCTTCCAGAGGGTTAAGTCAGCCAATGAGAATGAGAATGAAAGTGTACTAAACAAAGCAGTACATAAGTTGAATGGAAGTGAAACTAGCAATGATGCGTGTTCTCCTAGTACCTCTCCCAAATCTTCAAGTCCTGATTTTTCATCTCATGCTGTATCGGTATCCCAGAGCCCCTACGTGGAGAAACCGCAATTTGCAGGCATGCAATTCGACTATAACTTCCCTAGGCCAACTGCCCCCCCAGGGGCCCAGAGACCTACTCCAACCAGCAAGGATTGA 1209 0.4334 MVKETEYYDVLGVSPTASESEIKKAYYMKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPTQRQAYDAHGKSGISTEAIIDPAAIFAMLFGSELFEEYIGQLAMASMASMDIFTEGEQFDTKKLQEKMRVVQKEREEKLAEILKSRLNQYVQGNKEDFVNHAEAEVTRLSKAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSTEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNAKKEELRVRAKGLKTLGKIFQRVKSANENENESVLNKAVHKLNGSETSNDACSPSTSPKSSSPDFSSHAVSVSQSPYVEKPQFAGMQFDYNFPRPTAPPGAQRPTPTSKD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1257g00003 402 MobiDBLite consensus disorder prediction 334 372 - -
Gabi1257g00003 402 PRINTS DnaJ domain signature 63 82 IPR001623 -
Gabi1257g00003 402 PRINTS DnaJ domain signature 8 26 IPR001623 -
Gabi1257g00003 402 PRINTS DnaJ domain signature 26 41 IPR001623 -
Gabi1257g00003 402 PRINTS DnaJ domain signature 43 63 IPR001623 -
Gabi1257g00003 402 CDD DnaJ 6 60 IPR001623 -
Gabi1257g00003 402 FunFam Chaperone protein dnaJ 10 1 83 - -
Gabi1257g00003 402 Pfam X-domain of DnaJ-containing 133 324 IPR026894 -
Gabi1257g00003 402 Gene3D DnaJ domain 1 84 IPR036869 -
Gabi1257g00003 402 SMART dnaj_3 5 63 IPR001623 -
Gabi1257g00003 402 Pfam DnaJ domain 6 68 IPR001623 -
Gabi1257g00003 402 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Gabi1257g00003 402 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Gabi1257g00003 402 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Gabi1257g00003 402 Coils Coil 122 142 - -
Gabi1257g00003 402 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 337 - -
Gabi1257g00003 402 MobiDBLite consensus disorder prediction 334 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1257g00003 Gabi-Chr1257 8301 30209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1257g00003 7 70 C2H2 Transcription Factor Family AT1G74250 43.478 4.22e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1257g00003 - - cam:101512264 709.909