Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00025 ATGACTCCTGCTTCCAACGGCCACCTCACCGTCACCGTAAACGTCGATAGCACGCACCCACCTGACAATGACGCCCTCCCTCCCTCCGACAACAACCAAGATGACGACGACGACGAACTCGTTGATCCCGACGATCCTTTCGACATTGCCCAAACCAAAAATGCATCGCACGAGACGCTCAGGCGTTGGAGACAAGCAGCACTCGTGCTCAATGCATCCAGGCGTTTTAGATATACTCTGGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCTTGATTAGAGCTCATGCGCAAGTCATAAGAGCAGCACTGCTTTTCAGATTGGCCGGTGAGCGTGAGCTAGTGACAGGTGCAGCAATGACACCCCCAACTCCAGTTGATGGTGACTTCGCAGTTGGGCTCGAACAACTTTCTTCAATGTCTAAGGATCAGAATGTTTCTGCTTTACAACAATACGGGGGGATCAAAGGCTTGTCAAATTTACTAAAATCAAATCCGGATAAAGGAATTAGTGGTGATGACGCTGATCTATCAAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCAGCTGCAGTGTCATTGGCACTTGGAATAAAAACAGAGGGTTTGGAAGAAGGATGGTATGATGGGGGTAGCATTGCTTTTGCAGTTTTTCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCGCTGCAGTTTCAGAATTTGAATGCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGTGGGAGAACGATTAAAATATCGATATTTGATATTGTTGTTGGTGATATTGTACCCCTTAAAATAGGAGATCAGGTTCCTGCAGATGGAGTATTAATCACCGGTCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAAGCACCCTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGTTATGCTGGTAACTAGTGTTGGTATCAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAGACTCCGTTACAGGTCCGTTTGAATGGAGTAGCAACTTTAATTGGTATAGTTGGGCTTACTGTAGCTGTTTCAGTGCTTGCGATCCTCTTGGGCAGATACTTTTCCGGCAACACGAAAGATTTAGAGGGACACGTCCAATTTGTTGCCGGAAAAACTAGTGTTAGTGATGCAGTGGATGGAGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTTTACCTTTGGCTGTTACCTTAACCCTGGCTTACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTACGAAGGCTGTCAGCCTGCGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACGGGAACATTGACCTTAAATCAGATGACTGTAGTCGAGGCATACGTTGGGAGGAAGAAACACAATCCACCGGATGACTCATCAAAGTTGCATCCAGAAGTATTATCTCTGATAAATGAGGGCATTGCACACAATACAACTGGAAAAGTTTTCGTGCCTAAGGATGGCGGAGAGGCAGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGCATGAATTTTGATCTTATCAAATCAAATTCGACAGTTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTCTGAAGCTGGTGGACTCTGGTGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCAAACGGTCACTTGCAATCCATTGAAGAAGAGAAGGTGTTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATACAGATCATATGAAATAGACAAAGTTCCATCTAATGAGGAGGATTTAGACCAATGGTCTTTACCTGAAAATGAGCTTGTTTTACTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGCGTCAAAGAAGCTGTGAAATTATGCACTGACGCTGGTGTTAAGGTACGAATGGTTACCGGAGACAACCTTCAAACAGCAAAGGCAATTGCTTTGGAGTGTGGGATACTGGCTTCTGAAGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGAAAGGGAACAGATTGCTAAGAAAATAACGGTAATGGGTAGGTCTTCTCCTAATGACAAGCTTTTACTTGTGCAAGCACTACGTAAAGGGGGTGAAGTCGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCACGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCGGATATTATAATCCTGGATGATAACTTCGCATCAGTAGTAAAGGTTGTCCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAACGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTCTTGTGGGTCAACCTTATCATGGACACACTTGGCGCCCTTGCACTGGCTACTGAACCACCAACAGACAGCTTAATGAACAGATCACCAGTTGGCCGAAGGGAACCTCTTGTAACGAATTGCATGTGGAGAAACTTGATCGTTCAGGCTCTCTATCAAATCACTGTTCTTCTCGTTCTTAACTTCTCCGGTGAAAGTATTTTACCTGATCAAGATAATACAGCCCATGCCTTTCAAGTGAAGAATACTTTAGTATTCAATGCATTCGTCCTGTGCCAAATATTCAATGAGTTCAATGCCCGGAAACCAGAGGAAATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATAGTGGGAATAACGTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCGACAGTGAGGCTTGATTGGAAGCTGTGGCTTGCCTCTATTTGTATTGGCCTTGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCTAAAACACCTTTGTCCCGCTACATCAAAAGGCCACTTGAGCGATTGAGGAGATCTCGTGCTGCACAATAG 3273 0.436 MTPASNGHLTVTVNVDSTHPPDNDALPPSDNNQDDDDDELVDPDDPFDIAQTKNASHETLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKSLIRAHAQVIRAALLFRLAGERELVTGAAMTPPTPVDGDFAVGLEQLSSMSKDQNVSALQQYGGIKGLSNLLKSNPDKGISGDDADLSKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLALGIKTEGLEEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDIVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGVMLVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATLIGIVGLTVAVSVLAILLGRYFSGNTKDLEGHVQFVAGKTSVSDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKHNPPDDSSKLHPEVLSLINEGIAHNTTGKVFVPKDGGEAEVSGSPTEKAILSWAVKLGMNFDLIKSNSTVLHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGTCTQYLDSNGHLQSIEEEKVFFKEAIDDMAARSLRCVAIAYRSYEIDKVPSNEEDLDQWSLPENELVLLAIVGIKDPCRPGVKEAVKLCTDAGVKVRMVTGDNLQTAKAIALECGILASEEDAVEPNIIEGKTFRELSEKEREQIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMNRSPVGRREPLVTNCMWRNLIVQALYQITVLLVLNFSGESILPDQDNTAHAFQVKNTLVFNAFVLCQIFNEFNARKPEEMNVFRGVTKNRLFMGIVGITFILQIIIIEFLGKFTSTVRLDWKLWLASICIGLVSWPLAIAGKFIPVPKTPLSRYIKRPLERLRRSRAAQ 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00025 1090 SMART Cation_ATPase_N_a_2 153 227 IPR004014 -
Gabi1253g00025 1090 MobiDBLite consensus disorder prediction 29 45 - -
Gabi1253g00025 1090 Gene3D - 177 373 - -
Gabi1253g00025 1090 PRINTS Sodium/potassium-transporting ATPase signature 240 260 - -
Gabi1253g00025 1090 PRINTS Sodium/potassium-transporting ATPase signature 490 511 - -
Gabi1253g00025 1090 PRINTS Sodium/potassium-transporting ATPase signature 616 634 - -
Gabi1253g00025 1090 NCBIfam calcium-translocating P-type ATPase, PMCA-type 143 1067 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 205 262 - -
Gabi1253g00025 1090 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 701 IPR023299 GO:0000166
Gabi1253g00025 1090 SFLD C1.7: P-type atpase like 479 856 - -
Gabi1253g00025 1090 CDD P-type_ATPase_Ca_PMCA-like 179 937 - -
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 697 849 - -
Gabi1253g00025 1090 Pfam E1-E2 ATPase 274 475 - -
Gabi1253g00025 1090 MobiDBLite consensus disorder prediction 1 28 - -
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 9 plasma membrane-type 351 521 - -
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 507 704 - -
Gabi1253g00025 1090 NCBIfam HAD-IC family P-type ATPase 434 527 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1253g00025 1090 NCBIfam HAD-IC family P-type ATPase 770 885 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1253g00025 1090 SUPERFAMILY HAD-like 495 909 IPR036412 -
Gabi1253g00025 1090 SUPERFAMILY Calcium ATPase, transduction domain A 275 370 IPR008250 -
Gabi1253g00025 1090 Gene3D - 507 704 IPR023299 GO:0000166
Gabi1253g00025 1090 SFLD p-type atpase 479 856 IPR044492 -
Gabi1253g00025 1090 Pfam Ca2+-ATPase N terminal autoinhibitory domain 44 87 IPR024750 GO:0005516
Gabi1253g00025 1090 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Gabi1253g00025 1090 Gene3D - 494 849 IPR023214 -
Gabi1253g00025 1090 Pfam Cation transporter/ATPase, N-terminus 155 222 IPR004014 -
Gabi1253g00025 1090 MobiDBLite consensus disorder prediction 1 46 - -
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 55 111 - -
Gabi1253g00025 1090 Gene3D - 205 1055 - -
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 252 373 - -
Gabi1253g00025 1090 Gene3D - 55 109 - -
Gabi1253g00025 1090 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Gabi1253g00025 1090 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Gabi1253g00025 1090 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Gabi1253g00025 1090 PRINTS P-type cation-transporting ATPase superfamily signature 697 708 - -
Gabi1253g00025 1090 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Gabi1253g00025 1090 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Gabi1253g00025 1090 Coils Coil 639 659 - -
Gabi1253g00025 1090 PANTHER CATION TRANSPORTING ATPASE 96 1067 - -
Gabi1253g00025 1090 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 1067 IPR023298 -
Gabi1253g00025 1090 Pfam haloacid dehalogenase-like hydrolase 494 818 - -
Gabi1253g00025 1090 Pfam Cation transporting ATPase, C-terminus 889 1064 IPR006068 -
Gabi1253g00025 1090 FunFam Calcium-transporting ATPase 821 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00025 Gabi-Chr1253 172644 204068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00025 2 1089 Primary Pumps ATPases AT3G21180 75.758 0.0 1665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00025 K01537 - gmx:100777845 1841.24