Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00023 ATGGGTGAGGAGGTGAAGACAATTGTTCCAGAGTCTGTGCTGAAGAAGCAGAAGAGGGAAGAGGAATGGGCGTTGGCCAAAAAGCAAGATTTCGAAGCTGCTAAGAAGAAGAGAGCTGAGAGCCGTAAGCTGATCTTCAGCAGAGCTAAGCAATATGCCAAGGAGTACGATGAGCAGGAAAAGGAATTGATTCGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTCGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGCATCCCAAGACAAGAAAGATCCTGCAGCTGTTGCGATTGAGACAGATTTTCAATGGTGTGTTTCTTAAAGTTAACAAAGCTACCGTGAACATGCTTCACAGAGTTGAGCCTTATGTAACTTTCGGATACCCTAATCTGAAGAGTGTAAGAGAACTTATTTACAAGAGGGGGTATGGAAAGCTAAACAAGCAGAGAATTGCTCTAACCGATAACTCCGTCATTGAGCAGGCACTAGGCAAGCATGAAATCATATCCACTGAAGATCTTATCCATGAGATCATAACTGTTGGACCCCATTTTAAGGAGGCAAACAATTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAAAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAATCGTGAGAATTACATCAATGAGCTTATCCGGAGAATGAATTAA 732 0.4262 MGEEVKTIVPESVLKKQKREEEWALAKKQDFEAAKKKRAESRKLIFSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKLNKQRIALTDNSVIEQALGKHEIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00023 243 FunFam 60S ribosomal protein L7 141 203 - -
Gabi1253g00023 243 FunFam 60S ribosomal protein L7 189 243 - -
Gabi1253g00023 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Gabi1253g00023 243 Coils Coil 49 73 - -
Gabi1253g00023 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 IPR039699 -
Gabi1253g00023 243 FunFam 60S ribosomal protein L7 84 188 - -
Gabi1253g00023 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Gabi1253g00023 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Gabi1253g00023 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
Gabi1253g00023 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Gabi1253g00023 243 Gene3D - 84 186 IPR036919 -
Gabi1253g00023 243 Gene3D - 187 243 IPR036919 -
Gabi1253g00023 243 NCBIfam 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00023 Gabi-Chr1253 158823 161307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00023 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.000 2.10e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00023 K02937 - gmx:100813342 439.499