Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00019 ATGGATGGTATTCATGGGGGTGACTCTCGGATACACATTAGTGATGGACAACATCCTCTACCTCTGTCATACGTGCGAGAACATGAGCATCACGGATTGCACCATATGAGCAATGGGAATGGGATTGACGATGATCAGAATAATGGAGGTGATACTAACTGTGGTGGAAGTGAGAGTGTGGAAGGTGAAGTCCCATCCAACAATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGAGTGATGGTGGGGATCAGCTTACATTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCTGTTTCGCCAGAAAAGGTTCAAGCTGTACTACTATTACTGGGAGGCCGTGAAATACCTCCAACTATGCCTACCATCCCAATATCTCCTCACCAGAATAACCGGGGATTTACTGGAACACCACAAAAATTCAGCGTCCCCCAGAGGTTAGCTTCATTGATTAGATTTCGTGAGAAGCGGAAGGAACGGAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCTTGATGAATCTGCATCAGCTGCAACAAATTGGGGGACGAATGAAGGGTGGGTTTCAGACAATAATGGATCCCAACAGCAAGATGTTGTTTGTAGGCACTGTGGCACCAGTGAGAAGTGCACACCAATGATGCGACGTGGACCGGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGTACTCTGAGGGACCTATCAAAGGCAGCACCTTTGCCAGGACATAATTCGACATTAAACAAGAATGAGAATAAAAATTTAGAGGCCAACCAAATAGTGCTCAGAGTGGCAGGAGATGCTGATGATTCATCATGA 915 0.4459 MDGIHGGDSRIHISDGQHPLPLSYVREHEHHGLHHMSNGNGIDDDQNNGGDTNCGGSESVEGEVPSNNGNLPDNHAVIMDQGSDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTIPISPHQNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNLDESASAATNWGTNEGWVSDNNGSQQQDVVCRHCGTSEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPLPGHNSTLNKNENKNLEANQIVLRVAGDADDSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00019 304 CDD ZnF_GATA 225 276 IPR000679 GO:0006355|GO:0043565
Gabi1253g00019 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Gabi1253g00019 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Gabi1253g00019 304 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Gabi1253g00019 304 SMART tify_2 82 117 IPR010399 -
Gabi1253g00019 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 268 IPR000679 GO:0006355|GO:0043565
Gabi1253g00019 304 MobiDBLite consensus disorder prediction 33 75 - -
Gabi1253g00019 304 MobiDBLite consensus disorder prediction 40 74 - -
Gabi1253g00019 304 Gene3D - 216 285 IPR013088 GO:0006355|GO:0008270
Gabi1253g00019 304 Pfam tify domain 87 116 IPR010399 -
Gabi1253g00019 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Gabi1253g00019 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Gabi1253g00019 304 Pfam CCT motif 150 192 IPR010402 GO:0005515
Gabi1253g00019 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Gabi1253g00019 304 PANTHER GATA TRANSCRIPTION FACTOR 28 34 285 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00019 Gabi-Chr1253 130402 135160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00019 1 303 Tify Gene Family AT1G51600 63.844 1.56e-139 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1253g00019 CCT 8.7e-15 CL0281