Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00018 ATGAAGATGAAGGTTAGGGTTTGCGAGCTTTGCGATCAACAAGCTTCCCTCTATTGCCCCTCCGATTCAGCTTTTCTCTGCTGGAACTGCGACGACACCGTTCATCGCGCTAACTTCCTCGTAGCTCGCCACCTCCGCCACCTCCTCTGCTCCGAATGCAACCGTTTCGCCCAAACTCACATCGCCGGCGCTACACCTCCCTGCCTCGCACCAACCTGCCGCTCTTGCTCGCCGGAGAATCCTTCCGACGATGCCCCTTCTTCGTCTTCTTCATCTGCTTCCGTTTCCAGTTCCGAGTCTTGCGCTGCGGCTCCGAAGGAGATTAAGGTTAAGCGCCGCGCGAAGGCGGGGAGGGTGATGAGTTGTTCGAGTTCCGTGACCGACGATGGATCTCCGGCGGCGAAGAAGAGGCGGAGAAATGTTGAGTCGGTGGCGGTGGCGGTGGCGGAGTCGGAGGAGGTGTTTGTGAAATGGAGCAGAGAGTTAGGGTTAGAGTTAGGTGTGAACGGTAATCGCGTGGCGTCGCGTGCTCTGGGTTTGTGCGTTGGTGTTCCGTTAAGGGTTGCTGCTGCGACGTCGTTTTGGTTGGGCCTCAGATTTTGTGGGGACGAGTCACTCGCCACGTTTCAGAATCTGTCGAGGTTGGAGGCAATATCAGGGGTGCCAGCTAAGCTCATTGTGGCCGCACATGCCAAGCTCGCACGTGTCTTCACACACCGTTTCCAATTACAAGAAGGATCGGACGAGTCCTAA 753 0.5671 MKMKVRVCELCDQQASLYCPSDSAFLCWNCDDTVHRANFLVARHLRHLLCSECNRFAQTHIAGATPPCLAPTCRSCSPENPSDDAPSSSSSSASVSSSESCAAAPKEIKVKRRAKAGRVMSCSSSVTDDGSPAAKKRRRNVESVAVAVAESEEVFVKWSRELGLELGVNGNRVASRALGLCVGVPLRVAAATSFWLGLRFCGDESLATFQNLSRLEAISGVPAKLIVAAHAKLARVFTHRFQLQEGSDES 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00018 250 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gabi1253g00018 250 CDD Bbox1_BBX-like 7 49 - -
Gabi1253g00018 250 ProSiteProfiles Zinc finger B-box type profile. 3 44 IPR000315 GO:0008270
Gabi1253g00018 250 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 100 - -
Gabi1253g00018 250 SMART bboxneu5 3 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00018 Gabi-Chr1253 121068 122240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00018 5 242 C2C2-CO-like Transcription Factor Family AT3G21150 30.992 1.65e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1253g00018 zf-B_box 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00018 - - gmx:100781783 288.5