Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00010 ATGGCGAAGAAATCGCAGAGGAGGAGCCTTAACAAGAACACTATTGCCAGCAGCAACAAGAAGAGTATGAAACCAACGACGTCGGTGAAGCGGACACGAAAAAGCACTCCAAGAGACTCACCTCCACAACGAAGCTCAATCTACCGTGGTGTCACAAGGCATCGATGGACTGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTATATCTAGGGGCATACGACGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTATCAAATTATCAAGAGGAGCTCAAGGAGATGGAGGGCCAGTCAAAAGAAGAACATATTGGATCCCTGAGAAGAAAAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGTGTAGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAATAAATATTTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCACGGCATATGATATGGCAGCCATAGAGTTCCGAGGACTTAACGCCGTTACAAACTTTGACCTCAACCGTTATATCAATTTGCTACGTCCTAAAACCCAAGACAATCTTGAAAACCCTAGTAATGAAGAACTAAACCCTAATCCCGAACTTGAGCTAGGTTTTGTCTCCCATCAGCTTGGTTCAACCAATGGTGCTGATCATCTGGATCAATCTAATGGTGGCACCTCAACATCTTCCGCAATTGGGCTTCTCTTACAATCATCCAAATTCAAAGAAATGCTACAAAAGACTTCATCAACTGTAGATAATTACCCTCCAACACCTTCTGAGTCTAACCCTCCTCGTCGTACATTCCCCGAAGATATTCAAACAATCTTTGAAAGTCAAGATTCAGGAATCTACACCGAAAATGATGATACTATATTTGGTGACTTATGCTCATTTGCTGCACCAATTTTTCATTACGAGCTTGATGCTTAG 1041 0.4352 MAKKSQRRSLNKNTIASSNKKSMKPTTSVKRTRKSTPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYQEELKEMEGQSKEEHIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEFRGLNAVTNFDLNRYINLLRPKTQDNLENPSNEELNPNPELELGFVSHQLGSTNGADHLDQSNGGTSTSSAIGLLLQSSKFKEMLQKTSSTVDNYPPTPSESNPPRRTFPEDIQTIFESQDSGIYTENDDTIFGDLCSFAAPIFHYELDA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00010 346 FunFam AP2-like ethylene-responsive transcription factor 148 209 - -
Gabi1253g00010 346 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 243 - -
Gabi1253g00010 346 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 Pfam AP2 domain 47 105 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 SMART rav1_2 47 119 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 ProSiteProfiles AP2/ERF domain profile. 47 113 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 CDD AP2 46 115 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 FunFam AP2-like ethylene-responsive transcription factor 46 115 - -
Gabi1253g00010 346 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 Gene3D AP2/ERF domain 47 115 IPR036955 GO:0003700|GO:0006355
Gabi1253g00010 346 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Gabi1253g00010 346 MobiDBLite consensus disorder prediction 1 50 - -
Gabi1253g00010 346 SUPERFAMILY DNA-binding domain 46 115 IPR016177 GO:0003677
Gabi1253g00010 346 MobiDBLite consensus disorder prediction 282 305 - -
Gabi1253g00010 346 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Gabi1253g00010 346 SUPERFAMILY DNA-binding domain 148 208 IPR016177 GO:0003677
Gabi1253g00010 346 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00010 Gabi-Chr1253 69893 74104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00010 43 211 AP2-EREBP Transcription Factor Family AT5G57390 74.556 2.30e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi1253g00010 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00010 K09285 - jre:109011037 478.789