Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00008 ATGGAGAAATACGAGAAGCTTGAGAAGGTTGGAGAAGGAACGTATGGAAAAGTGTACAAGGCGAAGGACAAGGTAACTGGGCAAGTGGTTGCTCTGAAGAAGACACGTTTGGAGATGGACGAAGAAGGTGTGCCTCCAACGGCTCTCCGAGAGGTTTCACTCCTTCAGATGTTATCACAGTCCATTTACATCGTTCGTCTTCTCAACGTTGAGTATGTAGACAAGGTCCTAAAGACAAAGCCAGACACCACTGCTGCTGCTGGTGGTGGTTCTAACCCTAACCACACCAAATCCATTCTCTACCTTGTCTTTGAATATCTTGACACTGATCTCAAGAAGTTCATTGATTCACACCGCAAGGGCCAAAACCCTAGACCCCTTCCCCCTTCCCAGATACAAAGCTTCCTCTTCCAGCTTTGCATGGGTGTTGCACATTGCCATAGCCATGGTGTCCTCCACCGTGATCTCAAGCCCCAGAACCTTCTTCTTGATCAGAAAAACGGTATTCTCAAGATCGCTGATCTTGGCCTTGGACGTGCCTTTACTGTCCCTCTTAAGAGTTACACTCATGAGATTGTCACCCTCTGGTATAGAGCACCTGAGGTTCTTCTTGGCTCCACCCATTACTCAACTGGGGTTGACATGTGGTCTGTCGGATGCATCTTTGCTGAAATGGTCAGAAGGCAAGCTCTTTTTGCAGGGGATTCTGAGTTCCAGCAGCTCCTTCACATATTCAAGGTTTTGGGGACTCCAACAGAGGAGCAATGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTCTACCCACGGTGGGAACCTCAGAACTTGGCAGGGACTGTGCCGACCTTAGGACCTGAGGGAGTAGACCTTCTTTCGAAAATGCTCAAGTATAATCCTGCCGACAGGATATCTGCCAAAGCAGCACTTGATCATCCCTACTTTGACGGTCTTGACAAGTGTCAATTTTAA 969 0.4819 MEKYEKLEKVGEGTYGKVYKAKDKVTGQVVALKKTRLEMDEEGVPPTALREVSLLQMLSQSIYIVRLLNVEYVDKVLKTKPDTTAAAGGGSNPNHTKSILYLVFEYLDTDLKKFIDSHRKGQNPRPLPPSQIQSFLFQLCMGVAHCHSHGVLHRDLKPQNLLLDQKNGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFAGDSEFQQLLHIFKVLGTPTEEQWPGVTSLRDWHVYPRWEPQNLAGTVPTLGPEGVDLLSKMLKYNPADRISAKAALDHPYFDGLDKCQF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00008 322 Pfam Protein kinase domain 4 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1253g00008 322 Gene3D Transferase(Phosphotransferase) domain 1 110 321 - -
Gabi1253g00008 322 SUPERFAMILY Protein kinase-like (PK-like) 1 317 IPR011009 -
Gabi1253g00008 322 PANTHER CELL DIVISION PROTEIN KINASE 1 314 - -
Gabi1253g00008 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Gabi1253g00008 322 FunFam Cyclin-dependent kinase 2 110 321 - -
Gabi1253g00008 322 Gene3D Phosphorylase Kinase; domain 1 1 108 - -
Gabi1253g00008 322 FunFam Cyclin-dependent kinase 4 1 82 - -
Gabi1253g00008 322 SMART serkin_6 4 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1253g00008 322 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi1253g00008 322 ProSiteProfiles Protein kinase domain profile. 4 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00008 Gabi-Chr1253 56719 58863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00008 1 322 Core Cell Cycle Gene Families AT3G54180 79.193 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Gabi1253g00008 Pkinase 4.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00008 K07760 - gmx:100805119 560.451