Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00007 ATGGAGAAATACGAGAAGCTTGAGAAGGTTGGAGAAGGAACGTATGGAAAAGTGTACAAGGCGAAGGACAAGGTAACTGGGCAAGTGGTTGCTCTGAAGAAGACACGTTTGGAGATGGACGAAGAAGGTTTCATTGATTCACACCGCAAGGGCCAAAACCCTAGACCCCTTCCCCCTTCCCAGATACAAAGCTTCCTCTTCCAGCTTTGCATGGGTGTTGCACATTGCCATAGCCATGGTGTCCTCCACCGTGATCTCAAGCCCCAGAACCTTCTTCTTGATCAGAAAAACGGTATTCTCAAGATCGCTGATCTTGGCCTTGGACGTGCCTTTACTGTCCCTCTTAAGAGTTACACTCATGAGATTGTCACCCTCTGGTATAGAGCACCTGAGGTTCTTCTTGGCTCCACCCATTACTCAACTGGGGTTGACATGTGGTCTGTCGGATGCATCTTTGCTGAAATGGTCAGAAGGCAAGCTCTTTTTGCAGGGGATTCTGAGTTCCAGCAGCTCCTTCACATATTCAAGGTTTTGGGGACTCCAACAGAGGAGCAATGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTCTACCCACGGTGGGAACCTCAGAACTTGGCAGGGACTGTGCCGACCTTAGGACCTGAGGGAGTAGACCTTCTTTCGAAAATGCTCAAGTATAATCCTGCCGACAGGATATCTGCCAAAGCAGCACTTGATCATCCCTACTTTGACGGTCTTGACAAGTGTCAATTTTAA 759 0.4875 MEKYEKLEKVGEGTYGKVYKAKDKVTGQVVALKKTRLEMDEEGFIDSHRKGQNPRPLPPSQIQSFLFQLCMGVAHCHSHGVLHRDLKPQNLLLDQKNGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFAGDSEFQQLLHIFKVLGTPTEEQWPGVTSLRDWHVYPRWEPQNLAGTVPTLGPEGVDLLSKMLKYNPADRISAKAALDHPYFDGLDKCQF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00007 252 SUPERFAMILY Protein kinase-like (PK-like) 1 247 IPR011009 -
Gabi1253g00007 252 SMART serkin_6 4 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1253g00007 252 ProSiteProfiles Protein kinase domain profile. 1 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1253g00007 252 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Gabi1253g00007 252 FunFam Cyclin-dependent kinase 2 40 251 - -
Gabi1253g00007 252 PANTHER CELL DIVISION PROTEIN KINASE 1 40 - -
Gabi1253g00007 252 Gene3D Transferase(Phosphotransferase) domain 1 51 251 - -
Gabi1253g00007 252 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi1253g00007 252 Pfam Protein kinase domain 55 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1253g00007 252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 81 93 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00007 Gabi-Chr1253 56719 58863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00007 1 252 Core Cell Cycle Gene Families AT2G38620 82.540 1.98e-160 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Gabi1253g00007 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00007 K07760 - cave:132191995 442.965