Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00002 ATGGCTTCCAAGGCAGAAGGAAAGGCTATTGGCATTGACCTTGGCACCACTTACAGTTGCGTGGGTGTGTGGCAAAACGACCGCGTTGAGATCATAGCCAATGATCAAGGTAACAGAACCACTCCATCCTATGTAGCTTTCACTGACACAGAGCGTCTCATAGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCACAGAACACCGTTTTCGACGCAAAACGACTCATTGGTCGAAGATTCTCTGACCCTTCTGTTCAGAGCGACATGAAACACTGGCCTTTTAAGGTTGTTCCTGGTCCTGCCGACAAACCCATGATCGTGGTTCAGTATAAAGGTGAAGAGAAACGCTTTTCAGCTGAAGAGATTTCTTCCATGGTGTTGACCAAGATGAAGGAGATTGCTGAGGCTTTCTTGGGACAAACCATCAAGAACGCGGTGATTACTGTGCCTGCTTATTTCAACGATTCTCAGAGACAAGCTACAAAGGATGCTGGTGCCATTGCTGGTCTTAATGTGATGAGAATCATCAATGAGCCCACTGCCGCTGCTATTGCTTATGGTTTGGACAAGAAGGGTTCGAAGTCTGGTGAGAAGAACGTGCTTATCTTTGACCTTGGTGGTGGTACTTTTGATGTTTCTCTTCTCACCATTGAGGAAGGAATTTTTGAAGTGAAGGCCACTGCTGGGGACACTCATTTGGGAGGTGAAGATTTTGATAATAGGCTTGTGAATCACTTTGTGGCTGAGTTCAAGAGGAAGCAGAAGAAGGATATAAGCACAAGTGCTAGAGCTCTTAGGAGATTAAGGACTGCGTGTGAGAGGGCAAAGAGGACTCTCTCTTCCACCACACAGACAACCATTGAGATTGATTCCCTCTATGAAGGTATTGATTTCTATTCTACTATCACCAGAGCCAGGTTTGAGGAATTGAACATGGATTTGTTCAGAAAATGCATGGAACCCGTGGAGAAATGTTTGAGGGATTCAAAGATTGATAAGAGTCAAGTTCATGACGTTGTTCTTGTTGGTGGGTCAACAAGGATTCCAAAAGTGCAGCAGCTTTTGCAGGATTTCTTCAATGGCAAAGAGCTGTGCAAGAGTATTAACCCGGATGAAGCTGTGGCCTATGGAGCTGCAGTGCAAGCTGCTATTTTGAGTGGTGAAGGGGACCAGAAGAGAATGGTGCACGAGGCAGAGAAATACAAGGCAGAGGATGAGGAGGTGAAGAAAAAGGTGGATGCCAAGAACTCTTTGGAGAACTATGCTTACAACATGAGGAATACAGTGAAAGATGAGAAAATTGCAGGAAAATTGAATCCTGCTGATAAGCAGAAGATAGAGAAGGCAGTTGATGAGACTATTGAGTGGCTTGAAGGGAACCAACTGGCTGAGGTGGAGGAATTTGAGGACAAATTGAAGGAGTTGGAGGGATTGTGCAACCCAATCATCGCCAACATGTATCAAGGTGCTGGTGGGGATGTGCCAATGGGCGGTGCAGATGACATCCGTAATGGTGGCTATGGAAAATCATCAACTGGTGGAACTGGTGCTGGGCCTAAGATTGAAGAAGTTGACTAA 1581 0.4567 MASKAEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMKHWPFKVVPGPADKPMIVVQYKGEEKRFSAEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGSKSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKQKKDISTSARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKRMVHEAEKYKAEDEEVKKKVDAKNSLENYAYNMRNTVKDEKIAGKLNPADKQKIEKAVDETIEWLEGNQLAEVEEFEDKLKELEGLCNPIIANMYQGAGGDVPMGGADDIRNGGYGKSSTGGTGAGPKIEEVD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00002 526 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Gabi1253g00002 526 Coils Coil 459 479 - -
Gabi1253g00002 526 PANTHER HEAT SHOCK PROTEIN 70KDA 9 388 IPR013126 GO:0005524|GO:0140662
Gabi1253g00002 526 Gene3D - 71 126 - -
Gabi1253g00002 526 Gene3D - 10 384 - -
Gabi1253g00002 526 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gabi1253g00002 526 Gene3D - 192 366 - -
Gabi1253g00002 526 FunFam Heat shock protein 70 10 197 - -
Gabi1253g00002 526 FunFam Heat shock 70 kDa protein 71 126 - -
Gabi1253g00002 526 Pfam Hsp70 protein 9 391 IPR013126 GO:0005524|GO:0140662
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 209 219 - -
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 337 353 - -
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 369 389 - -
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 58 66 - -
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 146 166 - -
Gabi1253g00002 526 PRINTS 70kDa heat shock protein signature 36 48 - -
Gabi1253g00002 526 MobiDBLite consensus disorder prediction 496 526 - -
Gabi1253g00002 526 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gabi1253g00002 526 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi1253g00002 526 Gene3D Actin; Chain A, domain 4 235 318 - -
Gabi1253g00002 526 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Gabi1253g00002 526 FunFam Heat shock 70 kDa protein 198 268 - -
Gabi1253g00002 526 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Gabi1253g00002 526 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 414 493 IPR029048 -
Gabi1253g00002 526 Gene3D - 410 526 IPR029048 -
Gabi1253g00002 526 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Gabi1253g00002 526 FunFam Heat shock cognate 71 kDa protein 235 318 - -
Gabi1253g00002 526 FunFam Heat shock protein 70 417 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00002 Gabi-Chr1253 34527 36852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00002 1 526 Calmodulin-binding Proteins AT5G02500 83.460 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00002 K03283 - csin:114277576 790.415