Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1253g00001 ATGGCTTCCAAGGCAGAAGGAAAGGCTATTGGCATTGACCTTGGCACCACTTACAGTTGCGTGGGTGTGTGGCAAAACGACCGCGTTGAGATCATAGCCAATGATCAAGGTAACAGAACCACTCCATCCTATGTAGCTTTCACTGACACAGAGCGTCTCATAGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCACAGAACACCGTTTTCGACGCAAAACGACTCATTGGTCGAAGATTCTCTGACCCTTCTGTTCAGAGCGACATGAAACACTGGCCTTTTAAGGTTGTTCCTGGTCCTGCCGACAAACCCATGATCGTGGTTCAGTATAAAGGTGAAGAGAAACGCTTTTCAGCTGAAGAGATTTCTTCCATGGTGTTGACCAAGATGAAGGAGATTGCTGAGGCTTTCTTGGGACAAACCATCAAGAACGCGGTGATTACTGTGCCTGCTTATTTCAACGATTCTCAGAGACAAGCTACAAAGGATGCTGGTGCCATTGCTGGTCTTAATGTGATGAGAATCATCAATGAGCCCACTGCCGCTGCTATTGCTTATGGTTTGGACAAGAAGGGTTCGAAGTCTGGTGAGAAGAACGTGCTTATCTTTGACCTTGGTGGTGGTACTTTTGATGTTTCTCTTCTCACCATTGAGGAAGGAATTTTTGAAGTGAAGGCCACTGCTGGGGACACTCATTTGGGAGGTGAAGATTTTGATAATAGGCTTGTGAATCACTTTGTGGCTGAGTTCAAGAGGAAGCAGAAGAAGGATATAAGCACAAGTGCTAGAGCTCTTAGGAGATTAAGGACTGCGTGTGAGAGGGCAAAGAGGACTCTCTCTTCCACCACACAGACAACCATTGAGATTGATTCCCTCTATGAAGGTATTGATTTCTATTCTACTATCACCAGAGCCAGGTTTGAGGAATTGAACATGGATTTGTTCAGAAAATGCATGGAACCCGTGGAGAAATGTTTGAGGGATTCAAAGATTGATAAGAGTCAAGTTCATGACGTTGTTCTTGTTGGTGGGTCAACAAGGATTCCAAAAGTGCAGCAGCTTTTGCAGGATTTCTTCAATGGCAAAGAGCTGTGCAAGAGTATTAACCCGGATGAAGCTGTGGCCTATGGAGCTGCAGTGCAAGCTGCTATTTTGAGTGGTGAAGGGGACCAGAAGGTTCAGGACTTGCTTCTGCTTGATGTTACTCCTCTCAGCCTTGGTATTGAAACTGCAGGTGGTGTGATGACAGTGTTGATTCCGAGGAACACAACCATTCCAACCAAGAAAGAACAGATTTTCTCTACTTACTCAGATAATCAACCTGGAGTGCTAATTCAGGTCTATGAAGGTGAGAGGGCCAGAACCAAAGACAACAACCTTCTGGGAAAATTTGAGCTCAAAGGAATCCCACCAGCACCAAGAGGAGTTCCCCAAATCAATGAGGTGAAGAAAAAGGTGGATGCCAAGAACTCTTTGGAGAACTATGCTTACAACATGAGGAATACAGTGAAAGATGAGAAAATTGCAGGAAAATTGAATCCTGCTGATAAGCAGAAGATAGAGAAGGCAGTTGATGAGACTATTGAGTGGCTTGAAGGGAACCAACTGGCTGAGGTGGAGGAATTTGAGGACAAATTGAAGGAGTTGGAGGGATTGTGCAACCCAATCATCGCCAACATGTATCAAGGTGCTGGTGGGGATGTGCCAATGGGCGGTGCAGATGACATCCGTAATGGTGGCTATGGAAAATCATCAACTGGTGGAACTGGTGCTGGGCCTAAGATTGAAGAAGTTGACTAA 1803 0.4542 MASKAEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMKHWPFKVVPGPADKPMIVVQYKGEEKRFSAEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGSKSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKQKKDISTSARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELKGIPPAPRGVPQINEVKKKVDAKNSLENYAYNMRNTVKDEKIAGKLNPADKQKIEKAVDETIEWLEGNQLAEVEEFEDKLKELEGLCNPIIANMYQGAGGDVPMGGADDIRNGGYGKSSTGGTGAGPKIEEVD 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1253g00001 600 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 533 IPR029047 -
Gabi1253g00001 600 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 369 389 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 396 415 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 36 48 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 146 166 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 337 353 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 209 219 - -
Gabi1253g00001 600 PRINTS 70kDa heat shock protein signature 58 66 - -
Gabi1253g00001 600 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Gabi1253g00001 600 Gene3D - 192 366 - -
Gabi1253g00001 600 FunFam Heat shock 70 kDa protein 198 267 - -
Gabi1253g00001 600 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 384 481 IPR029047 -
Gabi1253g00001 600 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Gabi1253g00001 600 Gene3D - 71 126 - -
Gabi1253g00001 600 Pfam Hsp70 protein 9 489 IPR013126 GO:0005524|GO:0140662
Gabi1253g00001 600 Gene3D Actin; Chain A, domain 4 235 318 - -
Gabi1253g00001 600 FunFam Heat shock 70 kDa protein 389 542 - -
Gabi1253g00001 600 FunFam Heat shock protein 70 491 564 - -
Gabi1253g00001 600 PANTHER HEAT SHOCK PROTEIN 70KDA 9 526 IPR013126 GO:0005524|GO:0140662
Gabi1253g00001 600 FunFam Heat shock cognate 71 kDa protein 235 318 - -
Gabi1253g00001 600 FunFam Heat shock protein 70 10 197 - -
Gabi1253g00001 600 Coils Coil 533 553 - -
Gabi1253g00001 600 Gene3D - 10 383 - -
Gabi1253g00001 600 Gene3D - 485 600 IPR029048 -
Gabi1253g00001 600 MobiDBLite consensus disorder prediction 574 600 - -
Gabi1253g00001 600 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gabi1253g00001 600 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi1253g00001 600 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Gabi1253g00001 600 FunFam Heat shock 70 kDa protein 71 126 - -
Gabi1253g00001 600 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1253g00001 Gabi-Chr1253 34522 36852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1253g00001 1 600 Calmodulin-binding Proteins AT1G16030 77.321 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1253g00001 K03283 - pop:18094242 971.844