Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1251g00006 ATGGTGCTGCCTAGATGTTTCTCAGTGACACTTGTGCAGTTGTGGTTCTTGGCTTGCTTAATTTGCTTGTCTCTAGGTCTTAATAATCAAACGTCACCCTGTGATCCTCATGATTTATCAGCCTTGAAGGAGTTTGCAGGCAACCTTACAAATGGCTCTATCATCACAGCATGGTCCAATGATATTGTGTGCTGCAACTGGGTTGGAGTTGTCTGTGATAATGTGACTGGTGGTGGAGCAGCAGCTGCTAGTAGAGTGACCAAGTTGATCCTTCCTGGAATGGGTCTCAATGGGACAATTTCACCCTCTTTAGCACAGCTAGATCAACTCAATGTGCTGAACCTTTCATTTAATCGTCTTGTGGGTGGATTGCCTGCAGAGTTCTCCAAGTTGAAGCAGTTGAAATTACTTGACGTGAGCCACAATATGCTGTCAGGAGCTGTTGCTGGGGCACTTTTTGATTTGCAATCCATTGAAATATTGAATATTTCTAGTAATTCATTTGCTGGAGACCTCTTCCAGCTTGGGGAGTTCCGGCATCTCCATGCTCTCAATGTGAGTAACAACTCATTCACTGGCAGATTCAATTCTCAAATTTGCAGTTCTTCCAAGGATCTTCAGACCCTTGATTTATCTGCAAATAATTTTACTGGTGATCTTGAAGGCTTGGACAACTGCACCACATCTCTCCAACAATTGCATTTGGATTCAAATTCATTTTCTGGCCCTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGCAACTCTCAGTCTCAGCCAACAATTTATCTGGCCAGTTAAGCATGGAATTAAGTAAGCTCTCTAGCCTAAAAGTTCTAGTACTTTTTGGGAACCGGTTTTCAGGGGAACTCCCCAATGTGTTTGGGAACCTTTTGCACTTAGAACAATTAGTAGCACACGCCAATTCATTTTCTGGATCACTGCCTTCCACCTTGGCTTTATGCACTAAGCTTAGGGTGCTTGATCTTCGAAATAATTCCTTGTCAGGTCGCATTGATCTTAATTTCACTGGGTTGTCTAATCTTTGCACACTCGACCTTGCTACTAATCATTTTACTGGACCCCTTCCAAATTCCTTGTCCTATTGTCGTGAACTAAAAGTTTTAAGCCTTGCTAGGAATGGTTTAACTGGCCCTATCCCTGAAAACTATGCCAACCTCTCTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCGTAGAGAACTTATCTGGGGCGCTCTCTGTTCTGCAGCACTGCAAAAATCTCACTACTCTTATCCTCACGAAGAATTTCCATCGTGAGGAAATTCCTGAAAGTGTAACAGCAGGATTTGAGAGCCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGCTATATTCCTTCATGGTTATCGAATTGTAGGAAATTGGCAGTCCTTGATTTGTCTTGGAACCATTTGAATGGAAGTATTCCTTCGTGGATTGGTCAGATGGACAGTTTGTTCTACTTGGATTTCTCAAATAATTCTCTCACGGGTGAAATACCAAAAAGTTTGACGGAGTTGAGGGGCCTCATGTACCCAAATTATAGTAGACCAAATCTCACTCCATATGCAGGCATTCCTCTCTTTGTAAAGAGAAACACGAGTTCTAGCGGGCTGCAATATAACCAGGCCTCAAGTTTCCCTCCTGCAATATACTTGAGCAATAACATATTAAGTGGAAATATATGGCCTGAAATCGGTCGATTGAAGGCTCTGCATGTCTTAGATTTAAGCCGGAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGAAGAACTTGGAAATATTGGATTTGTCTTATAATGATCTCTCTGGTGCAATCCCTCTATCATTTAACAACCTCACATTCATGTCAAAGTTCAGTGTGGCATATAATCACTTACAAGGACCAATTCCAACTGGGGGGCAGTTTTTCAGCTTCCCCAGTTCAAGCTTTGAGGGAAACCTGGGGCTTTGTAGGGATATTGATTCTCCTTGCAATAATGTCAACAATACGAGGCCGAATATTTCTTCTGGTTCTTCCAGAAAACTTGGTAGAAGCAATGTCCTTGGCATAACAATCAGTATAGGCATAGGGCTTGCATTGCTTCTAGCATTTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAGCCTATTGATAACTTTGATGAGGAACTCAGTAGTAGGCCACACAGGTTATCTGAAGCTCTTGTTTCCTCAAAGTTGGTGCTTTTTCAAAATTCAGATTGCAAGGATCTCACAGTTGCAGATTTGTTAATATCCACAAACAATTTCAACCAGGCAAATATTGTTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATTTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCAGGGGACTGTGGTCAGATAGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGTTATTGTCGGTATGGCAATGACAGATTGCTAATTTACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGGAAATTCAGCTTTAAAATGGGATGCAAGACTCAAGATTGCACAAGGCGCAGCTCGTGGATTAGCTTACTTGCACAAGGGGTGTGAACCATACATAGTGCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGATAATTTTGAAGCTCATTTGGCTGATTTTGGGCTGTCAAGGCTACTGCAACCTTATGATACTCATGTTACAACAGACTTGGTAGGAACCTTAGGATATATACCTCCAGAATATAGTCAGACACTGACGGCAACCTTCAGGGGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACTGGTAGAAGGCCTGTAGAAGTCATAAAGGGGAAAAATTGCAGGAATCTGGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCCATTTGGCAGAAGGATCATGAGAAACAACTATTGGAGGTGCTTGCCATTGCTTGTAAATGTCTTGACCAAGATCCAAGGCAGAGACCCTCTATTGAAGTAGTTGTTTCAGGGCTTGATAGTGTAAGATTTGATGGCTCTCTCAACAATGATCTTTAG 3174 0.4171 MVLPRCFSVTLVQLWFLACLICLSLGLNNQTSPCDPHDLSALKEFAGNLTNGSIITAWSNDIVCCNWVGVVCDNVTGGGAAAASRVTKLILPGMGLNGTISPSLAQLDQLNVLNLSFNRLVGGLPAEFSKLKQLKLLDVSHNMLSGAVAGALFDLQSIEILNISSNSFAGDLFQLGEFRHLHALNVSNNSFTGRFNSQICSSSKDLQTLDLSANNFTGDLEGLDNCTTSLQQLHLDSNSFSGPLPDSLYSMSALEQLSVSANNLSGQLSMELSKLSSLKVLVLFGNRFSGELPNVFGNLLHLEQLVAHANSFSGSLPSTLALCTKLRVLDLRNNSLSGRIDLNFTGLSNLCTLDLATNHFTGPLPNSLSYCRELKVLSLARNGLTGPIPENYANLSSLLFVSLSNNSVENLSGALSVLQHCKNLTTLILTKNFHREEIPESVTAGFESLMVLALGNCGLKGYIPSWLSNCRKLAVLDLSWNHLNGSIPSWIGQMDSLFYLDFSNNSLTGEIPKSLTELRGLMYPNYSRPNLTPYAGIPLFVKRNTSSSGLQYNQASSFPPAIYLSNNILSGNIWPEIGRLKALHVLDLSRNNITGTIPSTISEMKNLEILDLSYNDLSGAIPLSFNNLTFMSKFSVAYNHLQGPIPTGGQFFSFPSSSFEGNLGLCRDIDSPCNNVNNTRPNISSGSSRKLGRSNVLGITISIGIGLALLLAFILLRMSKRDEDKPIDNFDEELSSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLISTNNFNQANIVGCGGFGLVYKAYFPNGTKAAIKRLSGDCGQIEREFQAEVEALSRAQHKNLVSLKGYCRYGNDRLLIYSYLENGSLDYWLHECVDGNSALKWDARLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDNFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWQKDHEKQLLEVLAIACKCLDQDPRQRPSIEVVVSGLDSVRFDGSLNNDL 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1251g00006 1057 FunFam Leucine-rich repeat receptor-like protein kinase 849 1055 - -
Gabi1251g00006 1057 SMART serkin_6 773 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1251g00006 1057 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Gabi1251g00006 1057 SMART LRR_typ_2 347 371 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 275 298 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 395 418 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 107 130 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 580 603 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 131 154 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 604 627 IPR003591 -
Gabi1251g00006 1057 SMART LRR_typ_2 470 494 IPR003591 -
Gabi1251g00006 1057 FunFam Tyrosine-sulfated glycopeptide receptor 1 344 678 - -
Gabi1251g00006 1057 SUPERFAMILY L domain-like 550 685 - -
Gabi1251g00006 1057 Pfam Leucine rich repeat 109 167 IPR001611 GO:0005515
Gabi1251g00006 1057 Pfam Leucine rich repeat 325 384 IPR001611 GO:0005515
Gabi1251g00006 1057 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Gabi1251g00006 1057 Pfam Leucine rich repeat 423 483 IPR001611 GO:0005515
Gabi1251g00006 1057 PRINTS Leucine-rich repeat signature 583 596 - -
Gabi1251g00006 1057 PRINTS Leucine-rich repeat signature 604 617 - -
Gabi1251g00006 1057 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 245 340 - -
Gabi1251g00006 1057 ProSitePatterns Protein kinases ATP-binding region signature. 779 801 IPR017441 GO:0005524
Gabi1251g00006 1057 ProSiteProfiles Protein kinase domain profile. 773 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1251g00006 1057 SUPERFAMILY Protein kinase-like (PK-like) 755 1042 IPR011009 -
Gabi1251g00006 1057 Gene3D Transferase(Phosphotransferase) domain 1 849 1054 - -
Gabi1251g00006 1057 ProSiteProfiles Leucine-rich repeat profile. 205 227 IPR001611 GO:0005515
Gabi1251g00006 1057 FunFam Leucine-rich repeat receptor-like kinase 37 152 - -
Gabi1251g00006 1057 CDD STKc_IRAK 779 1045 - -
Gabi1251g00006 1057 SUPERFAMILY L domain-like 58 289 - -
Gabi1251g00006 1057 Gene3D Ribonuclease Inhibitor 368 681 IPR032675 -
Gabi1251g00006 1057 ProSiteProfiles Leucine-rich repeat profile. 606 627 IPR001611 GO:0005515
Gabi1251g00006 1057 Pfam Protein kinase domain 774 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1251g00006 1057 FunFam Phytosulfokine receptor 1 736 848 - -
Gabi1251g00006 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Gabi1251g00006 1057 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 83 247 - -
Gabi1251g00006 1057 Gene3D Ribonuclease Inhibitor 33 265 IPR032675 -
Gabi1251g00006 1057 SUPERFAMILY RNI-like 227 522 - -
Gabi1251g00006 1057 Gene3D Phosphorylase Kinase; domain 1 735 848 - -
Gabi1251g00006 1057 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Gabi1251g00006 1057 Gene3D Ribonuclease Inhibitor 266 367 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1251g00006 Gabi-Chr1251 59967 64176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1251g00006 11 1050 Receptor kinase-like Gene Family AT1G55610 34.107 1.31e-171 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi1251g00006 Pkinase 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1251g00006 - - gmx:100797812 1743.01