Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1251g00004 ATGGAGGCCAGGATAATAGAGAGGAAGCAAATGTCAATTGAGAAGATGAGGAAGAACAGCACAGTTGAAGAAGTAGAAGATGAAGAAGAGGAGGAGGATGAAAGTACTGGTGGTGGTGATGGTTGTCTTGCAGAAGATGAGAAGAAGAGAGGTACTGGTTGGAGTGGGAGAAGAGGGTCAAGTGAGGGTGGAGGAGTTTCTCCACCTTCCTGTAAGGCAGAGAAGTGTTGTGCTGATTTAAGTGTTGCAAAGAAGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCGGAGTTTGATGAAGCTAAAAGAAGCTGCCGGAGACGCTTAGCCAGACATAATGAGCGGCGCCGGAAAAATAATGTAGAAATGCTGATGACTGTGGGAGAATTCAGATGA 474 0.4789 MEARIIERKQMSIEKMRKNSTVEEVEDEEEEEDESTGGGDGCLAEDEKKRGTGWSGRRGSSEGGGVSPPSCKAEKCCADLSVAKKYHRRHKVCELHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLARHNERRRKNNVEMLMTVGEFR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1251g00004 157 Gene3D - 62 132 IPR036893 GO:0003677|GO:0005634
Gabi1251g00004 157 Coils Coil 121 141 - -
Gabi1251g00004 157 MobiDBLite consensus disorder prediction 41 55 - -
Gabi1251g00004 157 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 146 IPR044817 GO:0003677
Gabi1251g00004 157 PIRSF SBP 7 156 IPR017238 GO:0003677|GO:0003700|GO:0009908
Gabi1251g00004 157 FunFam Squamosa promoter-binding-like protein 14 63 132 - -
Gabi1251g00004 157 Coils Coil 8 28 - -
Gabi1251g00004 157 MobiDBLite consensus disorder prediction 14 72 - -
Gabi1251g00004 157 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677|GO:0005634
Gabi1251g00004 157 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Gabi1251g00004 157 MobiDBLite consensus disorder prediction 24 40 - -
Gabi1251g00004 157 Pfam SBP domain 71 144 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1251g00004 Gabi-Chr1251 38838 39692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1251g00004 56 155 SBP-box Gene Family AT1G53160 66.000 5.12e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi1251g00004 SBP 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1251g00004 - - gmx:100815775 184.111