Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1251g00003 ATGACTGCCAGAGAAATCCTTTGTAAGATGAAGGAAAAAGTTGGGTTGGGTTCATCAGAAACTGATTCAGGGAAAGGAAAGAGCAAGATATCGAAGCACATAACTCATGGCTATCACTTGGTAAAGGGAAGATCATATCATGCCATGGAGGATTATGTTGTTGCTCAATTTAAGCAAGTTGATAACAATGAATTAGGTTTGTTTGCAATATTTGATGGCCACGCAGGTCACAATGTTCCTAATTACTTGCGGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGATTTCTGGAAAGAACCTGCAAAGGCTGTCAGGAGAGCATATAGTATAACTGATTCTAATATTTTAGACAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTGATCAATTGTCAGAAATTAGTAGTAGCCAATATTGGGGATTCCAGGGCTGTCTTATGCAAGAATGGTGTGGCCAAACAACTATCAGTGGATCATGAGCCAACCACTGAACATGAGGATATAAAAAATAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTTCCACGGGTTGATGGACGGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCTTGAAGAAGCACTTGAGTTCAGAGCCACATGTGAAAATGGTGATGATAAATGATGATGCAGAGTTTATTATATTAGCCAGTGATGGATTATGGAAGGTAATGTCAAATCAAGAAGCAGTTGATTCTATCAAAGGTATAAAGAATGCTCGGTCTTCAGCAAAGCGCCTTACTGAAGAAGCACTTAATAGGGAAAGCAACGATGATATCTCCTGCATTGTTGTGAAATTTCAGTGA 852 0.3944 MTAREILCKMKEKVGLGSSETDSGKGKSKISKHITHGYHLVKGRSYHAMEDYVVAQFKQVDNNELGLFAIFDGHAGHNVPNYLRSHLFDNILKEPDFWKEPAKAVRRAYSITDSNILDKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCKNGVAKQLSVDHEPTTEHEDIKNRGGFVSNFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPHVKMVMINDDAEFIILASDGLWKVMSNQEAVDSIKGIKNARSSAKRLTEEALNRESNDDISCIVVKFQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1251g00003 283 Pfam Protein phosphatase 2C 48 275 IPR001932 -
Gabi1251g00003 283 PANTHER PROTEIN PHOSPHATASE 27 282 IPR015655 GO:0004722|GO:0006470
Gabi1251g00003 283 SMART PP2C_4 33 280 IPR001932 -
Gabi1251g00003 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Gabi1251g00003 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Gabi1251g00003 283 ProSitePatterns PPM-type phosphatase domain signature. 67 75 IPR000222 GO:0043169
Gabi1251g00003 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Gabi1251g00003 283 Gene3D - 30 283 IPR036457 -
Gabi1251g00003 283 CDD PP2Cc 36 282 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1251g00003 Gabi-Chr1251 35360 38448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1251g00003 1 283 PP2C-type Phosphatase Gene Family AT3G15260 74.394 8.27e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1251g00003 K17506 - gmx:100815245 488.804