Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1245g00001 ATGTTTTTGTTCATGAATCTGTGTGCCAAGCCAACCCCCGTTGATGGGGATGAAGATGACCGTGGGAACGGCACGCCGAACACAAAAGAAGCCGTCAAGGGTCTGACGTCGCAGATTAAGGATCTGGCGCTGAAGCTTTCAGGGAAGAAAATCAAAGCTGGCAACCCCAAGAGCATCAAGTATGACACCGTTTCTGAAGAGGTTCCATACAGCTACATTGGTGGTGGAAGCGCAAGTTTAACCCCTGCTTTGGACTACACAAACCCCAATGAATCCCCAATTGGTAACACCACCCCTGGAGGGCGTCAACCTCAACCACCAGCTGGTAGTGTAGCGATGGTGGACATGACTGGATCCAACAAGTGGATAGCAAAGATGGAGCCAGGTGCTCACATCACCGTTGTGTCTCTTCCTACTGGGGGCAATGATCTCAAAAGGATTCGCTTCTGCCGAGACATGTTTGATAAGCCGCGAGCCCAGAGGTTGTGGGCTGAGAATTACGACAGGATCAGGGAGCTTCATAATATCCAGAATTTAAATCAACATGTTTTCAACACTCCTGCAAGGTCTGATGATGATGAGATTAAGGATCTGGCGCTGAAGCTTTCAGGGAAGAAAATCAAAGGTGGCACCTCCGAGAGCATCAACGCAAGTTCAACCCCTGCTTTGGACTACACAAACCCCAATCAATCCCCAATTGGTAACACCACCCCTGGAGGGCGTCAACCTCAACCACCAGCTGGTAGTGTAGCGTTGGTGGACATGACTGGATCCAACGAGTGGATAGCACAGATGGAGCCAGGTGTTCACATCACCGTTGTGTCTCTTCCTACTGGGGGCAATGATCTCAAAAGGATTCGCTTCTGGTATGTATAA 876 0.4977 MFLFMNLCAKPTPVDGDEDDRGNGTPNTKEAVKGLTSQIKDLALKLSGKKIKAGNPKSIKYDTVSEEVPYSYIGGGSASLTPALDYTNPNESPIGNTTPGGRQPQPPAGSVAMVDMTGSNKWIAKMEPGAHITVVSLPTGGNDLKRIRFCRDMFDKPRAQRLWAENYDRIRELHNIQNLNQHVFNTPARSDDDEIKDLALKLSGKKIKGGTSESINASSTPALDYTNPNQSPIGNTTPGGRQPQPPAGSVALVDMTGSNEWIAQMEPGVHITVVSLPTGGNDLKRIRFWYV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1245g00001 291 ProSiteProfiles BRX domain profile. 120 175 IPR013591 -
Gabi1245g00001 291 MobiDBLite consensus disorder prediction 83 104 - -
Gabi1245g00001 291 ProSiteProfiles BRX domain profile. 259 291 IPR013591 -
Gabi1245g00001 291 MobiDBLite consensus disorder prediction 209 243 - -
Gabi1245g00001 291 MobiDBLite consensus disorder prediction 209 249 - -
Gabi1245g00001 291 MobiDBLite consensus disorder prediction 11 30 - -
Gabi1245g00001 291 MobiDBLite consensus disorder prediction 83 108 - -
Gabi1245g00001 291 PANTHER PROTEIN BREVIS RADIX-LIKE 1 215 288 IPR044532 -
Gabi1245g00001 291 Pfam Transcription factor BRX N-terminal domain 25 48 IPR027988 -
Gabi1245g00001 291 Pfam Transcription factor regulating root and shoot growth via Pin3 259 288 IPR013591 -
Gabi1245g00001 291 Pfam Transcription factor regulating root and shoot growth via Pin3 120 174 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1245g00001 Gabi-Chr1245 263 2958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1245g00001 5 288 Major Intrinsic Protein MIP AT1G31880 39.571 6.11e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1245g00001 - - cit:102623997 211.846