Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1241g00009 ATGCTGTTTTCAGCGGTGGCTATTTCCTTAGGAGGAATAGTCTCTATAGCAACAGTAATTGGAGTCATTCTCTACAAGAAGCATAGTCAAGTGAAGAGAAAAGCAAAGAAGACCATAATGAAAAGGAAGAAGGAAATCTCAAGTGTTAAAGCTAATGCTTTATCATCGAGGATCTTCACGGGCAGAGAGATAAAGAAAGCAACAAACAATTTCTCCCAAGAAAATCTCATTGGCTCTGGTGGTTTTGGTGAAGTGTTCAAGGGAACTTTTGATGATGGAACCATCACTGCCATCAAGCGTGCCAAGCTTGGAAACACAAAAGGCATTGATCAAATACAAAATGAGGTTCGAATACTCTGCCAAGTTAACCATAGAAGCCTAGTGAGACTTCTTGGTTGTTGCTTGGAACTTGAACACCCTTTACTAATATATGAGTATGTTTCTAATGGCACACTTTTTGATTACATACATCGCCACCACCCTTTTGGAACAAGGGCACCTCTCAAATGGCATCAAAGACTCAAAATTGCACACCAAACAGCTGAAGGACTTTCATATCTTCATTCTTCTGCTGTGCCACCCATTTACCACCGTGATGTGAAATCAAGTAATATACTTCTTGATGATAAGTTTGATGCCAAAGTTTCAGACTTTGGCTTATCTAGGCTTGTTGAATTAGCTGAAGAAAATAAGAGCCATATCTTCACTAGTGCTCGGGGAACACTTGGTTATCTTGACCCTGAATACTATCGTAACTTTCAACTCACAGATAAGAGTGATGTTTATAGCTTTGGAGTGGTGTTGATGGAGCTTCTAACTGCTCAGAAAGCTATTGATTTCAATAGGGAAGAAGAGAATGACTTGGCTGTGTATGCTAAGAAGAAATTGATTGATGATAAGTTGATGGATGTTGTTGATCCGTTGCTTAAAGAGGGAGCTAGCAATTTGGAATTGGAAACTATGAAATCATTGGGTTATCTTGCAGCTACATGTATGGATCACCAGAGAAGACATCAACGGCCTTCAATGAAAGAAGTTTCTGATGAGATTGAATACCTGATTAAAATTGTTAAAGGTCAGGTTTCGAAACAATAA 1095 0.389 MLFSAVAISLGGIVSIATVIGVILYKKHSQVKRKAKKTIMKRKKEISSVKANALSSRIFTGREIKKATNNFSQENLIGSGGFGEVFKGTFDDGTITAIKRAKLGNTKGIDQIQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYIHRHHPFGTRAPLKWHQRLKIAHQTAEGLSYLHSSAVPPIYHRDVKSSNILLDDKFDAKVSDFGLSRLVELAEENKSHIFTSARGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQKAIDFNREEENVXLAVYAKKKLIDDKLMDVVDPLLKEGASNLELETMKSLGYLAATCMDHQRRHQRPSMKEVSDEIEYLIKIVKGQVSKQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1241g00009 365 CDD STKc_IRAK 77 352 - -
Gabi1241g00009 365 SUPERFAMILY Protein kinase-like (PK-like) 45 349 IPR011009 -
Gabi1241g00009 365 FunFam Wall-associated receptor kinase-like 20 147 364 - -
Gabi1241g00009 365 SMART serkin_6 71 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1241g00009 365 Gene3D Phosphorylase Kinase; domain 1 28 146 - -
Gabi1241g00009 365 ProSiteProfiles Protein kinase domain profile. 71 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1241g00009 365 PIRSF ILK 17 364 - -
Gabi1241g00009 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gabi1241g00009 365 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Gabi1241g00009 365 Gene3D Transferase(Phosphotransferase) domain 1 147 364 - -
Gabi1241g00009 365 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 354 IPR045274 GO:0007166
Gabi1241g00009 365 Pfam Protein kinase domain 72 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1241g00009 365 FunFam Wall-associated receptor kinase-like 20 33 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1241g00009 Gabi-Chr1241 212381 213477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1241g00009 15 364 Receptor kinase-like Gene Family AT5G02070 64.023 5.40e-163 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1241g00009 Pkinase 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1241g00009 - - aprc:113862410 611.298