Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1237g00007 ATGACTGTGGATGAAGTGGTTAGTAGCTCTGAATGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCTTTGGCAATTCATCCAGAGGATGCTTCAGATCGATGGGAGAAGATTGCGGCTGATGTACCTGGGAAGACTGTAGAAGAAATTAAACAGCATTATGAGCTCTTAGTTTATGATATTAACCAGATCGAATCTGGTTGTGTACCTCTACCATCTTATAACTCTTCTTCAGAGGGCACAACAAGCCAGGCTAGTGATGAAGGAATTGGCAAGAAGGGGGCCCATCTTGGGCAGCATAACAGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAGGAACGACGGAAGGGTATTGCTTGGACAGAGGAGGAACACAGGTTATTCCTTCAGGGCTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGTCAAGAACACCTACACAAGTAGCGAGTCATGCTCAAAAATACTTCATTCGTTTGAACTCGATGAATAGAGATAGAAGGCGATCCAGCATACATGATATAACCAGTGTTAACAATGGAGAGATTTCAGCACCACAAGGACCAATAACTGGTCAAACAAATGGTTCTGCTGGAAATTCTACCAGCAAATCTCCCAAACAAGCCCCTCCAGTTTCATCTGGGGTACCAGGTGTAGGAATATATACTGCTCCTACCATTGGACAACCTATAGGAGGACCCCTAGTATCTGCTGTTGGCACCCCAGTGAATCTTCCTGTCCCTGCACACATGGCATATGGTGTTCGAGCCCCAGTTCCGGGTTCAGTTGTACCTGGTGCACCAATGAACATGGGCCCTATGACCTACCCTATGCCACATACATATGCTCCTCTCAGGTGA 891 0.4545 MTVDEVVSSSEWSREQDKAFENALAIHPEDASDRWEKIAADVPGKTVEEIKQHYELLVYDINQIESGCVPLPSYNSSSEGTTSQASDEGIGKKGAHLGQHNSESNHGTKASRSDQERRKGIAWTEEEHRLFLQGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGEISAPQGPITGQTNGSAGNSTSKSPKQAPPVSSGVPGVGIYTAPTIGQPIGGPLVSAVGTPVNLPVPAHMAYGVRAPVPGSVVPGAPMNMGPMTYPMPHTYAPLR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1237g00007 296 SMART sant 8 60 IPR001005 -
Gabi1237g00007 296 SMART sant 119 169 IPR001005 -
Gabi1237g00007 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Gabi1237g00007 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Gabi1237g00007 296 CDD SANT 11 58 IPR001005 -
Gabi1237g00007 296 MobiDBLite consensus disorder prediction 178 226 - -
Gabi1237g00007 296 CDD SANT 122 167 IPR001005 -
Gabi1237g00007 296 MobiDBLite consensus disorder prediction 72 119 - -
Gabi1237g00007 296 FunFam transcription factor MYB1R1 121 172 - -
Gabi1237g00007 296 Gene3D - 121 173 - -
Gabi1237g00007 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gabi1237g00007 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Gabi1237g00007 296 PANTHER TRANSCRIPTION FACTOR KUA1 7 290 - -
Gabi1237g00007 296 MobiDBLite consensus disorder prediction 184 220 - -
Gabi1237g00007 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Gabi1237g00007 296 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Gabi1237g00007 296 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Gabi1237g00007 296 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gabi1237g00007 296 FunFam Transcription factor SRM1 4 71 - -
Gabi1237g00007 296 Gene3D - 10 57 - -
Gabi1237g00007 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Gabi1237g00007 296 MobiDBLite consensus disorder prediction 72 88 - -
Gabi1237g00007 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1237g00007 Gabi-Chr1237 113237 124532 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1237g00007 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1237g00007 - - gmx:100779792 521.161