Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1237g00001 ATGTCACAAGTTTCTGAGGAGATAAAGAGTGTTGAACAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTAATGTCTTCTGATGCTTCCATTTCTGAACCAAATAAATCAAACCCAACAACCACATCATTGGAGGAGGAAAGTGTAGACACCAAGGAAGAGCCAAGGGGAATGGAAGAGGCCTCAGAACCCAAGAAAGGTGGTGTTTTTGATAATGGGACTAATGGTGAGAAGCATGAGAGTGTTCCCTCTGTTGGGTTTAGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTACATTCTCATGGCAATTGGAACCGTTGGAGCATTTGTACATGGCTGTTCCTTGCCACTGTTTCTTCGGTTCTTCGCTGATCTTGTAAATTCTTTTGGTTCCAATGCTAATGATGTGGACAAGATGACCCAGGAAGTCGTGAAGTATGCATTTTACTTCTTGGTTGTTGGTGCTGCTATATGGGCATCCTCTTGGGCAGAGATTTCGTGCTGGATGTGGACCGGAGAGCGCCAATCAACGAGGATGAGGATCAAGTATCTTGAAGCTGCTTTAGACCAGGACATTCAATTCTTTGACACTGAAGTTCGAACATCCGATGTTGTTTTTGCCATTAACAGTGATGCTGTGATGGTACAAGATGCCATTAGCGAGAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGATTTGTTGTTGGTTTCACTGCTGTTTGGCAATTAGCACTTGTTACCCTTGCTGTAGTCCCTATGATAGCTGTAATAGGAGGCATTCACATGACCACCTTGGCCAAGCTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAATATAGTGGAACAGACTGTTGTTCAAATTAGAGTGGTTTTGGCGTTTGTTGGGGAGAATAGAGCACTACAAGGCTACTCCTCTGCATTAAGGATTGCCCAGAAGATTGGTTACAAGAGTGGATTCGCAAAGGGTATGGGATTGGGTGCTACTTACTTTGTTGTTTTCTGCTGCTATGCTCTTCTGCTATGGTATGGAGGCTATCTGGTTAGGCACCAATACACCAATGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGATTGGCTTTAGGCCAGTCAGCACCTAGCATGGCTGCGTTTACAAAGGCCAGAGTTGCTGCTGCAAAGATTTACCGTGTGATTGATCACAAGCCTGGTATAGACAGAAACAGTGAATCAGGTTTGGAGTTAGAGACTCTTACAGGACTAGTGGAGTTGAAAAATGTGGACTTTTCATACCCATCAAGGCCTGAGGTTCTGATCCTTAACAATTTCTCCTTGAATGTGCCTTCTGGCAAGACCATAGCTTTGGTGGGAAGCAGTGGCTCTGGCAAGAGCACAGTTGTCTCCCTTATTGAGAGATTCTATGATCCTTCTTCTGGACAAGTTTTGTTAGATGGGCATGATGTTAAGAATTTGAAGCTTAGATGGCTGAGACAACAGATAGGACTAGTGAGCCAAGAGCCTGCTTTATTTGCTACCACAATTCGAGAAAATATACTCTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCCAGAGTAGCTAATGCTTATTCATTCATCATCAAACTTCCTGATGGTTATGAAACTCAGGTTGGAGAGAGAGGACTGCAACTTTCAGGAGGACAAAAGCAGAGAATAGCAATTGCAAGAGCAATGTTGAAAAACCCTGCAATTCTTCTCCTTGATGAGGCAACAAGTGCATTGGACTCTGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGATCGGTTCATGATTGGTAGAACAACTCTTGTAATTGCTCATCGCCTCTCCACTATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAGCGTTTCTGAAATTGGAACTCATGATGAGCTATTTGCTAAAGGTGAAAATGGAATCTATGCAAAGCTTATCCGGATGCAGGAGATGGCACATGAAAATCTTATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCAAGGAACTCTGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCACCGTACTCAAGGAGGCTATCTGACTTTTCTACATCTGATTTTAGTCTTTCCCTTGATGCATCACATGCAAATTACAGGCATGAAAAACTTGCCTTCAAAGAGCAAGCTAGTTCCTTTTGGCGACTTGCAAAAATGAACTCTCCTGAGTGGCTTTATGCTTTAATTGGCTCTATAGGCTCTATTGTTTGTGGATCCCTTAGTGCTTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCAAACCACAGACACATGATCCGAGAAATTGATAAGTACTGCTACTTGTTGATTGGGCTTTCATCGGCTGCACTTATCTTCAATACATTGCAGCACTTCTTCTGGGATATTGTTGGTGAAAATCTTACAAAACGAGTGAGGGAGAAAATGTTGACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTGCAGCAAGGCTAGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGTACTGCAGGGTTTGTATTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCTGTCTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGAGTGGTTTCTCTGGTGACTTGGAAGCTGCTCATGCCAAGGCCACACAACTAGCTGGAGAGGCTATAGCCAATGTAAGGACTGTTGCTGCCTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCACTTCCAACCTTGAAACTCCACTGCGGCGCTGCTTTTGGAAGGGACAAATTTCTGGAATTGGATATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGCATTTCTGATTTCTCAAAAACAATCCGAGTTTTTATGGTCCTCATGGTGTCTGCTAACGGTGCTGCCGAAACTTTAACACTGGCTCCTGATTTCATCAAGGGTGGTCAAGCCATGAGATCAGTCTTTAGTCTCCTTGACCGTAGAACTGAAATTGAGCCAGATGATCCAGATGCTACACCTGTCCCTGATCAACTTCGTGGGGAAGTGGAACTCAAGCATGTTGACTTCTCTTATCCCACTAGACCTGATACGCCAGTTTTTCGCGACCTTAGTCTTCGTGCAAGGGCAGGTAAAACTCTTGCCCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTCATTGCACTTATACAAAGGTTCTATGATCCAACATCAGGCCGTGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTGAAGTCCCTTAGAAGGCACATTGCTTTGGTACCTCAGGAGCCATGCCTTTTTGCTGCTACTATTTATGAAAACATTGCTTATGGTCATGACTCAGCTACTGAAGCTGAGATTATTGAGGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTTCTCTGCCAGATGGATACAAGACATTTGTTGGGGAGAGAGGAGTTCAACTATCTGGAGGACAGAAGCAAAGAATAGCAATTGCTAGAGCTTTTGTGAGGAAAACAGAACTTATGCTTCTTGATGAAGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCAGTTCAGGAGGCACTAGATCGTGCCTGCTCAGGAAAAACTACTATTATTGTTGCACACAGGCTTTCAACTATCAGGAGTGCCAATCTTATTGCAGTGATTGATGATGGGAAAGTAGCAGAACAAGGCTCACATTCACAGTTGTTGAAAAATCACCCTGATGGGATCTATGCACGCATGATTCAATTACAAAGGTTCACAAATAGCCAAGTCATTGGGATGGCCTCAGGTTCAAGTTCTTCAGCAAGACCAAAAGATGATGAAAAAGAAGGCTAG 4044 0.4372 MSQVSEEIKSVEQWRWSEMQGLELMSSDASISEPNKSNPTTTSLEEESVDTKEEPRGMEEASEPKKGGVFDNGTNGEKHESVPSVGFSELFRFADGLDYILMAIGTVGAFVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHMTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVLAFVGENRALQGYSSALRIAQKIGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHQYTNGGLAIATMFSVMIGGLALGQSAPSMAAFTKARVAAAKIYRVIDHKPGIDRNSESGLELETLTGLVELKNVDFSYPSRPEVLILNNFSLNVPSGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKNLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAYSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGIYAKLIRMQEMAHENLMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHANYRHEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIDKYCYLLIGLSSAALIFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMSGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLETPLRRCFWKGQISGIGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFSLLDRRTEIEPDDPDATPVPDQLRGEVELKHVDFSYPTRPDTPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIALVPQEPCLFAATIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKTELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRSANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTNSQVIGMASGSSSSARPKDDEKEG 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1237g00001 1347 Gene3D ABC transporter type 1, transmembrane domain 1047 1324 IPR036640 GO:0005524|GO:0016020
Gabi1237g00001 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 103 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1237g00001 1347 FunFam ABC transporter B family member 1 416 666 - -
Gabi1237g00001 1347 SUPERFAMILY ABC transporter transmembrane region 745 1068 IPR036640 GO:0005524|GO:0016020
Gabi1237g00001 1347 FunFam ABC transporter B family member 19 1047 1069 - -
Gabi1237g00001 1347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1081 1317 IPR003439 GO:0005524
Gabi1237g00001 1347 CDD ABC_6TM_Pgp_ABCB1_D2_like 747 1063 - -
Gabi1237g00001 1347 CDD ABC_6TM_Pgp_ABCB1_D1_like 102 399 - -
Gabi1237g00001 1347 Gene3D - 1070 1321 IPR027417 -
Gabi1237g00001 1347 Gene3D - 416 666 IPR027417 -
Gabi1237g00001 1347 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Gabi1237g00001 1347 MobiDBLite consensus disorder prediction 25 81 - -
Gabi1237g00001 1347 Pfam ABC transporter 1100 1248 IPR003439 GO:0005524
Gabi1237g00001 1347 PANTHER ABC TRANSPORTER B FAMILY 74 806 IPR039421 -
Gabi1237g00001 1347 FunFam ABC transporter B family member 1 1071 1321 - -
Gabi1237g00001 1347 FunFam ABC transporter B family member 1 737 1046 - -
Gabi1237g00001 1347 Gene3D ABC transporter type 1, transmembrane domain 89 677 IPR036640 GO:0005524|GO:0016020
Gabi1237g00001 1347 Gene3D ABC transporter type 1, transmembrane domain 737 1046 IPR036640 GO:0005524|GO:0016020
Gabi1237g00001 1347 ProSitePatterns ABC transporters family signature. 1220 1234 IPR017871 GO:0005524|GO:0016887
Gabi1237g00001 1347 FunFam ABC transporter B family member 1 89 424 - -
Gabi1237g00001 1347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 662 IPR003439 GO:0005524
Gabi1237g00001 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 758 1045 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1237g00001 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1072 1320 IPR027417 -
Gabi1237g00001 1347 CDD ABC_MTABC3_MDL1_MDL2 1081 1320 - -
Gabi1237g00001 1347 MobiDBLite consensus disorder prediction 25 45 - -
Gabi1237g00001 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 665 IPR027417 -
Gabi1237g00001 1347 SUPERFAMILY ABC transporter transmembrane region 90 410 IPR036640 GO:0005524|GO:0016020
Gabi1237g00001 1347 CDD ABC_MTABC3_MDL1_MDL2 426 665 - -
Gabi1237g00001 1347 Pfam ABC transporter transmembrane region 103 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1237g00001 1347 Pfam ABC transporter transmembrane region 759 1028 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1237g00001 1347 MobiDBLite consensus disorder prediction 46 66 - -
Gabi1237g00001 1347 Pfam ABC transporter 444 593 IPR003439 GO:0005524
Gabi1237g00001 1347 SMART AAA_5 453 639 IPR003593 GO:0016887
Gabi1237g00001 1347 SMART AAA_5 1108 1300 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1237g00001 Gabi-Chr1237 15868 22199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1237g00001 78 1342 Calmodulin-binding Proteins AT2G36910 88.152 0.0 2296