Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1236g00003 ATGGAAACACCAACGACACTCACCGGGTTGCTCCGCCGCATCGCCGCGAAATTCCCCTCCCGGAGAGCCATCTCCGTCGCCGGAAAGTTCGACCTCACCCACTCCCGCCTCAACGAACTCGTCGACCTAGCCGCCGCTGGCCTTGTCTCCGCCGGAATCAAGACCGGCGACGTCGTCGCACTCACCTTCCCCAACACCGTCGAGTTTGTCATTTTGTTCTTAGCCGTTATTCGAGCACGAGCAACGGCGGCGCCACTGAATGCGGCTTACACAGAAGAAGAGTTCGAGTTTTATTTGTCTGACTCAGAATCGAAGCTTCTACTAACGACGTCGTTTGAAGGAAACAAGCCAGCTCAAGCCGCGGCTTCGAAGCTCAACATACCCTGCGGCTCGGCTTCACTTACTCAAGCCGAAGGCAATGAAGCTGAGTTGAGTCTCTCGCTGAACCAGCCCGAGTCAGAGCTCGACTCAGTGAACTCGCTCCCCGGACTCAGTAACGACCCTTCCGACGTGGCGCTGTTCCTCCACACCTCCGGAACCACGAGCCGCCCCAAGGGGGTTCCGCTGACTCAGCACAACTTGTTCTCGTCGGTACGGAACATTCAATCGGTGTACCGACTCACTGAGTCTGACTCCACGGTCATCGTGCTTCCGTTGTTCCATGTTCACGGTTTGATCGCCGGATTACTGAGTTCACTCGGTGCCGGCGCGGCGGTGGCGCTGCCGGCGGCGGGGAGGTTCTCTGCTTCGACGTTCTGGAAGGACATGATTAAGTACAACGCCACGTGGTATACTGCGGTTCCTACCATACACCAGATCGTACTGGATCGCCACCTGTACAACCCGGAACCCGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGCAGCGCGTCGCTTGCACCGGTTATATTGGGTCGGTTGGAGGAGGCATTCGGAGCCCCGGTTTTGGAGGCTTATGCGATGACTGAGGCGTCTCATCTCATGGCTTCGAACCCGTTGCCGGAAGATGGGCCCCACAAGGCCGGGTCGGTTGGGAAACCCGTGGGTCAAGAAATGGCAATATTGAGTGAGACGGGTCGGGTCTTAGAAGCTGAATCCAATGGTGAGGTTTGTATTCGGGGACCCAATGTGACAAAAGCATACAAGAACAACCTGGATGCTAATACGACGGCGTTTCAGTTTGGTTGGTTTCACACTGGCGATCTTGGTTACTTTGACCCAGATGGGTACTTGCATCTTGTGGGTCGGATCAAGGAGCTCATAAACAGAGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTGCTTCTATCACATCCAGACATTGCTCAGGCTGTTGCTTTCGGAGTTCCTGATGAGAAATATGGCGAAGAGATACAATGTGCAATCATCCCAAGAGAAGGATCACACATTGATGAGGCAGAGGTTATAAGATTTAGCAAGAAGAACCTTGCATCTTTTAAAGTCCCCAAAAAGGTCTTCCTTACTGATTCTTTGCCCAAGACCGCCACTGGCAAGATTTTGAGGCGTCTTGTGGCAGAACACTTCATCTCTCAAACTTGA 1566 0.537 METPTTLTGLLRRIAAKFPSRRAISVAGKFDLTHSRLNELVDLAAAGLVSAGIKTGDVVALTFPNTVEFVILFLAVIRARATAAPLNAAYTEEEFEFYLSDSESKLLLTTSFEGNKPAQAAASKLNIPCGSASLTQAEGNEAELSLSLNQPESELDSVNSLPGLSNDPSDVALFLHTSGTTSRPKGVPLTQHNLFSSVRNIQSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASTFWKDMIKYNATWYTAVPTIHQIVLDRHLYNPEPVYPKLRFIRSCSASLAPVILGRLEEAFGAPVLEAYAMTEASHLMASNPLPEDGPHKAGSVGKPVGQEMAILSETGRVLEAESNGEVCIRGPNVTKAYKNNLDANTTAFQFGWFHTGDLGYFDPDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDEKYGEEIQCAIIPREGSHIDEAEVIRFSKKNLASFKVPKKVFLTDSLPKTATGKILRRLVAEHFISQT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1236g00003 521 Gene3D - 417 519 IPR045851 -
Gabi1236g00003 521 SUPERFAMILY Acetyl-CoA synthetase-like 4 519 - -
Gabi1236g00003 521 CDD FACL_fum10p_like 19 515 IPR045310 GO:0016874
Gabi1236g00003 521 ProSitePatterns Putative AMP-binding domain signature. 174 185 IPR020845 -
Gabi1236g00003 521 Gene3D - 1 416 IPR042099 -
Gabi1236g00003 521 FunFam 4-coumarate--CoA ligase 2 419 520 - -
Gabi1236g00003 521 Pfam AMP-binding enzyme 12 423 IPR000873 -
Gabi1236g00003 521 Pfam AMP-binding enzyme C-terminal domain 432 507 IPR025110 -
Gabi1236g00003 521 PANTHER ACYL-COA SYNTHETASE 6 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1236g00003 Gabi-Chr1236 64846 68830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1236g00003 5 520 Monolignol Biosynthesis Gene Families AT4G05160 32.957 1.43e-64 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1236g00003 K22133 - gmx:100779306 844.728