Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00025 ATGGATGATGATCTTTCGTCCAGCCTTCTTTGCCAAGAAAACCAAACATTCTTGGAAGGAGATGTGGGAGATGAAGAATACTCATTCATTCAATTGCGTCAGGATTGTGGTGTTTCAGAGGATGAGCATGTGGGTGTTTTGATTGAGAGAGAGATCAGTCTTGGGTTCAAAAAGGATGAAACTTTGGCATTTGGGGACTGGGTGAAACGTGCACGCTTGGATTCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGTTTTCGCCTTCAAACGGCTTATTTGTCTGTCACATACTTCGATCGATTCCTTTCAAGGCGGTCCATTGATAGTGAAAAGTATTGGGCAATTCGGTTACTATCAGTTGCATGCCTTTCTCTGGCTGCAAAGATGGAGGAGTGCAATGTGCCGGGGCTATCAGGGTTTCGATTGGAAGATTATTGCTTTGAGAGCAAAGTGATTCAAAAAATGGAGCTTTTGGTGCTGAGCACATTGGAGTGGAATATGGGTGTTATCACTCCCTTTGCTTTTCTTTCTTATTTCATCACAAAGTTCTGCAACGAATCCCCATCAAGTCCTATTTTTTCCAAGACCATGCCACTCATCTTCACCACAATGGAAGAGGTCAATTTGATGGATCACAAACCATCTGTTATTGCAGCAGCTGCTACTTTGGTGGCGCTGGATCAGCAATTGACGGTGGAAGCTGTAGAGTTGAAGATGAGTTCAATTCCTCAACATTGGTTTCCTGAACCTAGAGATGTATTTGTGTGCTACAATCTGATTCAAAGATTATACGTGGAGAAAACTAGAAGAGACAAGCTTTTACATACGCCAAATTCTTCACTCATCCGATCCAAGCCAATTGACATGATAGAGAGTTCTCTAGTTACTTCTTCTGCTATGACAAAGAGAAGAAGACTCACATTCATTGATGATAAAGATAGTCCTGATGGGAAGGGACTCCACCAGGGAAATCCAAAGTTTTGA 990 0.4202 MDDDLSSSLLCQENQTFLEGDVGDEEYSFIQLRQDCGVSEDEHVGVLIEREISLGFKKDETLAFGDWVKRARLDSINWILKTRATLGFRLQTAYLSVTYFDRFLSRRSIDSEKYWAIRLLSVACLSLAAKMEECNVPGLSGFRLEDYCFESKVIQKMELLVLSTLEWNMGVITPFAFLSYFITKFCNESPSSPIFSKTMPLIFTTMEEVNLMDHKPSVIAAAATLVALDQQLTVEAVELKMSSIPQHWFPEPRDVFVCYNLIQRLYVEKTRRDKLLHTPNSSLIRSKPIDMIESSLVTSSAMTKRRRLTFIDDKDSPDGKGLHQGNPKF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00025 329 Pfam Cyclin, C-terminal domain 172 268 IPR004367 -
Gabi1235g00025 329 PANTHER CYCLINS 70 267 IPR039361 -
Gabi1235g00025 329 Pfam Cyclin, N-terminal domain 70 169 IPR006671 -
Gabi1235g00025 329 FunFam Cyclin-D5-1 171 259 - -
Gabi1235g00025 329 CDD CYCLIN_AtCycD-like_rpt1 71 167 - -
Gabi1235g00025 329 CDD CYCLIN_AtCycD-like_rpt2 172 262 - -
Gabi1235g00025 329 FunFam Cyclin-D5-1 67 170 - -
Gabi1235g00025 329 ProSitePatterns Cyclins signature. 72 103 IPR006671 -
Gabi1235g00025 329 SUPERFAMILY Cyclin-like 154 244 IPR036915 -
Gabi1235g00025 329 SUPERFAMILY Cyclin-like 36 169 IPR036915 -
Gabi1235g00025 329 SMART cyclin_7 77 163 IPR013763 -
Gabi1235g00025 329 Gene3D - 165 276 - -
Gabi1235g00025 329 Gene3D - 65 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00025 Gabi-Chr1235 187939 189402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00025 9 255 Core Cell Cycle Gene Families AT4G37630 36.641 1.70e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00025 K18811 - gmx:100798728 462.611