Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00024 ATGGAGAGTTATCTGAATGAGAACTTTGGGGATGTGAAGGCGAAGAACTCATCGGAAGAAGCGCTTCAGAGATGGAGGAAGCTCTGTTGGCTTGTTAAGAACCGTAAAAGGAGGTTTCGCTTCACTGCTAATCTCTCCAAGCGATTTGAAGCTGAAGCTATCAGACGCTCCAATCAGGAGAAATTCAGAGTAGCAGTGTTGGTTTCACAAGCTGCACTTCAGTTTATCAATGGTCTAAAGTTGTCTAGTGAGTACATTGTACCGGAGGAAGTTAAAGCTGCAGGTTTTGAAATTTGTGCTGATGAGTTGGGGTCAATTGTTGATGGACGTGATGTGAAGAAGTTGAAAATTCATGATGGGGTTGAGGGTATCGCAAACAAAGTCAGTACCTCAGTCAATGATGGGATATCAACATCTGAGCACTTGCTGAATCTGAGAAAAGAAATTTATGGAATTAATAAATTCAATGAAAGCCCAATCCGGGGATTTTGGGTTTTTGTATGGGAAGCCCTTCAAGATACAACCCTCATGATACTTGCTTTATGTGCCTTGATCTCTTTGGTGGTTGGTATAATAATGGAAGGGTGGCCCAAGGGTGCACAGGATGGAATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTCGTCACTGCCACTAGTGATTACAGACAATCGTTGCAGTTTAAGGATCTAGATAGAGAGAAGAAAAAAATTACAGTTCAGGTCACACGAAATGGCTGTAGACAGAAGATATCAATATATGATCTACTTCCTGGTGATGTTGTCCATCTTAATATTGGAGATCAGGTTCCTGCTGATGGGCTTTTTGTGTCCGGTTTCTCTGTGTTGATAAATGAATCAAGTTTGACAGGAGAAAGTGAACCAGTGAATGTCAGTGACCGTAATCGCTTTCTTCTCTCTGGAACCAAAGTCCAGGATGGATCATGTAAGATGCTTGTGACTGCTGTTGGAATGAGGACCCAATGGGGTAAACTAATGGCTACTTTGAGTGAAGGGGGAGATGATGAGACTCCCTTGCAGGTAAAACTCAATGGTGTGGCTACCATTATTGGGAAAATAGGCCTCTTTTTCGCTGTTGTGACTTTTTCTGTGTTGGTCCAAGGGCTATTTAGCCGCAAGCTGCGAGAAGGATCCCAATGGACGTGGTCTGGTGATGATGCTATGGAAATGGTGGAATTCTTTGCTATTGCTGTTACTATTGTTGTTGTTGCTGTTCCTGAAGGTTTACCTTTAGCTGTAACATTGAGCCTTGCTTTTGCCATGAAAAAGATGATGAATGATAAGGCACTTGTCCGTAATTTGGCTGCTTGTGAGACAATGGGATCTGCCACTACTATCTGCAGTGACAAGACCGGCACACTAACTACTAACCATATGACTGTTGTAAAAGCTTGCGTATGTGGGAAGATTAAAGAAGTGAATAGCTCTAAGGTCTCTTCTGATTTCTCATCTGATCTTCCTGATTCTGCTCTGGCAATTCTACTTGAATCAATATTTAACAACACTGGAGGAGAAGTTGTAAAAAACAAAGATGAGAAGATTGAGATTCTGGGATCACCAACTGAGACTGCACTCTTGGAATTTGGGCTGTCACTGGGTGGTGATTTCCTTAAGGAACGACAAGTGTTAAAACTTGTGAAAGTTGAACCATTTAATTCTGTAAAGAAGCGCATGGGTGTGGTTCTACAGCTTCCTAATGGTAGTTTCAGAGCACACTGCAAAGGTGCCTCTGAAATAGTTCTAGCTGCATGTGACAAAGTTGTGGACTCAAATGGTGAGATTGTTCCCCTTGATGAAGACTCCATCAATCACTTGAAGGATACAATTGCAAAATTTGCTGGTGAAGCTCTCCGAACCCTTTGCCTTGCTTACATGGACATTTGCCCTGAATTCCGTGAGAAGAGTGAGGAGGAATTGCTTGATATCATTCCAAAAATTCAGGTAATGGCTCGATCTTCACCCATGGATAAGCATGCCCTGGTGAAATACTTAAGGACAACATTTGAAGAGGTTGTTTCAGTTACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGTGCCGATGTAATAATACTAGATGATAACTTTTCCACTATTGTGACAGTGGCCAAATGGGGCCGTTCAGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATATTGTTGCTTTGATCGTCAATTTCTCTTCTGCCTGTTTGACCGGAAATGCTCCACTTACTGCGGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCGCTAGCCACCGAACCTCCTAATGACGACTTGATGAAAAAACCACCTGTTGGTAGGAAAGGAAACTTCATCAGTAATGTGATGTGGAGGAATATCTTGGGGCAGTCTATGTATCAATTTGTCGTAATCTGGTTCCTCCAGAGAAGAGGGAAAGTAGCTTTTCATCTTGATGGCCCAGATTCTGATCTGACGTTGAATACACTCATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATCAGTTCTAGAGATATGGAGAGGATAAATGTTTTTGAAGGTATACTGAAGAATTATGTGTTTGTAGCTGTCCTCACTTGCACTATCATCTTCCAAATCGTAATTGTCGAATTCTTGGGCACCTATGCAAACACATCTCCGCTTAGTTTGAAGCAGTGGTTTAGTAGCATTCTCCTCGGAGTCCTTGGCATGCCAATTGCAGCAGCTTTAAAGATGATCCCCGTGTGA 2832 0.4213 MESYLNENFGDVKAKNSSEEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFINGLKLSSEYIVPEEVKAAGFEICADELGSIVDGRDVKKLKIHDGVEGIANKVSTSVNDGISTSEHLLNLRKEIYGINKFNESPIRGFWVFVWEALQDTTLMILALCALISLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDREKKKITVQVTRNGCRQKISIYDLLPGDVVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVSDRNRFLLSGTKVQDGSCKMLVTAVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLREGSQWTWSGDDAMEMVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACVCGKIKEVNSSKVSSDFSSDLPDSALAILLESIFNNTGGEVVKNKDEKIEILGSPTETALLEFGLSLGGDFLKERQVLKLVKVEPFNSVKKRMGVVLQLPNGSFRAHCKGASEIVLAACDKVVDSNGEIVPLDEDSINHLKDTIAKFAGEALRTLCLAYMDICPEFREKSEEELLDIIPKIQVMARSSPMDKHALVKYLRTTFEEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKKPPVGRKGNFISNVMWRNILGQSMYQFVVIWFLQRRGKVAFHLDGPDSDLTLNTLIFNSFVFCQVFNEISSRDMERINVFEGILKNYVFVAVLTCTIIFQIVIVEFLGTYANTSPLSLKQWFSSILLGVLGMPIAAALKMIPV 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00024 943 Pfam Cation transporting ATPase, C-terminus 767 941 IPR006068 -
Gabi1235g00024 943 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Gabi1235g00024 943 PRINTS P-type cation-transporting ATPase superfamily signature 706 718 - -
Gabi1235g00024 943 PRINTS P-type cation-transporting ATPase superfamily signature 682 701 - -
Gabi1235g00024 943 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Gabi1235g00024 943 FunFam Calcium-transporting ATPase 464 648 - -
Gabi1235g00024 943 NCBIfam calcium-translocating P-type ATPase, PMCA-type 112 640 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi1235g00024 943 Gene3D - 214 311 - -
Gabi1235g00024 943 PRINTS Sodium/potassium-transporting ATPase signature 578 596 - -
Gabi1235g00024 943 PRINTS Sodium/potassium-transporting ATPase signature 447 468 - -
Gabi1235g00024 943 PRINTS Sodium/potassium-transporting ATPase signature 204 224 - -
Gabi1235g00024 943 PANTHER CATION TRANSPORTING ATPASE 84 633 - -
Gabi1235g00024 943 Gene3D - 17 77 - -
Gabi1235g00024 943 NCBIfam HAD-IC family P-type ATPase 394 478 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00024 943 NCBIfam HAD-IC family P-type ATPase 651 763 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00024 943 NCBIfam HAD-IC family P-type ATPase 206 377 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00024 943 FunFam Calcium-transporting ATPase 217 337 - -
Gabi1235g00024 943 FunFam Calcium-transporting ATPase 17 77 - -
Gabi1235g00024 943 Gene3D - 511 650 IPR023299 GO:0000166
Gabi1235g00024 943 FunFam Calcium-transporting ATPase 699 943 - -
Gabi1235g00024 943 SUPERFAMILY Calcium ATPase, transmembrane domain M 120 942 IPR023298 -
Gabi1235g00024 943 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 638 IPR023299 GO:0000166
Gabi1235g00024 943 Pfam Cation transport ATPase (P-type) 515 594 - -
Gabi1235g00024 943 Gene3D - 312 510 - -
Gabi1235g00024 943 SUPERFAMILY HAD-like 637 730 IPR036412 -
Gabi1235g00024 943 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Gabi1235g00024 943 Gene3D - 694 942 - -
Gabi1235g00024 943 Pfam E1-E2 ATPase 237 432 - -
Gabi1235g00024 943 SUPERFAMILY Calcium ATPase, transduction domain A 238 334 IPR008250 -
Gabi1235g00024 943 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Gabi1235g00024 943 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00024 Gabi-Chr1235 172640 185463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00024 636 943 Primary Pumps ATPases AT1G27770 85.065 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00024 K01537 - gmx:100810758 1129.01