Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00022 ATGGAGAGTTATCTGAATGAGAACTTTGGGGATGTGAAGGCGAAGAACTCATCGGAAGAAGCGCTTCAGAGATGGAGGAAGCTCTGTTGGCTTGTTAAGAACCGTAAAAGGAGGTTTCGCTTCACTGCTAATCTCTCCAAGCGATTTGAAGCTGAAGCTATCAGACGCTCCAATCAGGAGAAATTCAGAGTAGCAGTGTTGGTTTCACAAGCTGCACTTCAGTTTATCAATGGTCTAAAGTTGTCTAGTGAGTACATTGTACCGGAGGAAGTTAAAGCTGCAGGTTTTGAAATTTGTGCTGATGAGTTGGGGTCAATTGTTGATGGACGTGATGTGAAGAAGTTGAAAATTCATGATGGGGTTGAGGGTATCGCAAACAAAGTCAGTACCTCAGTCAATGATGGGATATCAACATCTGAGCACTTGCTGAATCTGAGAAAAGAAATTTATGGAATTAATAAATTCAATGAAAGCCCAATCCGGGGATTTTGGGTTTTTGTATGGGAAGCCCTTCAAGATACAACCCTCATGATACTTGCTTTATGTGCCTTGATCTCTTTGGTGGTTGGTATAATAATGGAAGGGTGGCCCAAGGGTGCACAGGATGGAATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTCGTCACTGCCACTAGTGATTACAGACAATCGTTGCAGTTTAAGGATCTAGATAGAGAGAAGAAAAAAATTACAGTTCAGGTCACACGAAATGGCTGTAGACAGAAGATATCAATATATGATCTACTTCCTGGTGATGTTGTCCATCTTAATATTGGAGATCAGGTTCCTGCTGATGGGCTTTTTGTGTCCGGTTTCTCTGTGTTGATAAATGAATCAAGTTTGACAGGAGAAAGTGAACCAGTGAATGTCAGTGACCGTAATCGCTTTCTTCTCTCTGGAACCAAAGTCCAGGATGGATCATGTAAGATGCTTGTGACTGCTGTTGGAATGAGGACCCAATGGGGTAAACTAATGGCTACTTTGAGTGAAGGGGGAGATGATGAGACTCCCTTGCAGGTAAAACTCAATGGTGTGGCTACCATTATTGGGAAAATAGGCCTCTTTTTCGCTGTTGTGACTTTTTCTGTGTTGGTCCAAGGGCTATTTAGCCGCAAGCTGCGAGAAGGATCCCAATGGACGTGGTCTGGTGATGATGCTATGGAAATGGTGGAATTCTTTGCTATTGCTGTTACTATTGTTGTTGTTGCTGTTCCTGAAGGTTTACCTTTAGCTGTAACATTGAGCCTTGCTTTTGCCATGAAAAAGATGATGAATGATAAGGCACTTGTCCGTAATTTGGCTGCTTGTGAGACAATGGGATCTGCCACTACTATCTGCAGTGACAAGACCGGCACACTAACTACTAACCATATGACTGTTGTAAAAGCTTGCGTATGTGGGAAGATTAAAGAAGTGAATAGCTCTAAGGTCTCTTCTGATTTCTCATCTGATCTTCCTGATTCTGCTCTGGCAATTCTACTTGAATCAATATTTAACAACACTGGAGGAGAAGTTGTAAAAAACAAAGATGAGAAGATTGAGATTCTGGGATCACCAACTGAGACTGCACTCTTGGAATTTGGGCTGTCACTGGGTGGTGATTTCCTTAAGGAACGACAAGTGTTAAAACTTGTGAAAGTTGAACCATTTAATTCTGTAAAGAAGCGCATGGGTGTGGTTCTACAGCTTCCTAATGGTAGTTTCAGAGCACACTGCAAAGGTGCCTCTGAAATAGTTCTAGCTGCATGTGACAAAGTTGTGGACTCAAATGGTGAGATTGTTCCCCTTGATGAAGACTCCATCAATCACTTGAAGGATACAATTGCAAAATTTGCTGGTGAAGCTCTCCGAACCCTTTGCCTTGCTTACATGGACATTTGTGATGAATTTTTAGTTGAAGGACCTATTCCTATCAGGGGTTACACATGCATAGGAATTGTGGGTATTAAAGATCCAGTTCGCCCTGGTGTTCGAGAGTCTGTCGCCATTTGTAGGTCAGCTGGTATTACTGTTAGGATGGTTACCGGAGACAACATAGACACTGCAAAGGCTATTGCTAGAGAATGTGGAATTCTAACGGATGGTATAGCAATTGAAGGCCCTGAATTCCGTGAGAAGAGTGAGGAGGAATTGCTTGATATCATTCCAAAAATTCAGGTAATGGCTCGATCTTCACCCATGGATAAGCATGCCCTGGTGAAATACTTAAGGACAACATTTGAAGAGGTTGTTTCAGTTACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGTGCCGATGTAATAATACTAGATGATAACTTTTCCACTATTGTGACAGTGGCCAAATGGGGCCGTTCAGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATATTGTTGCTTTGATCGTCAATTTCTCTTCTGCCTGTTTGACCGGAAATGCTCCACTTACTGCGGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCGCTAGCCACCGAACCTCCTAATGACGACTTGATGAAAAAACCACCTGTTGGTAGGAAAGGAAACTTCATCAGTAATGTGATGTGGAGGAATATCTTGGGGCAGTCTATGTATCAATTTGTCGTAATCTGGTTCCTCCAGAGAAGAGGGAAAGTAGCTTTTCATCTTGATGGCCCAGATTCTGATCTGACGTTGAATACACTCATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATCAGTTCTAGAGATATGGAGAGGATAAATGTTTTTGAAGGTATACTGAAGAATTATGTGTTTGTAGCTGTCCTCACTTGCACTATCATCTTCCAAATCGTAATTGTCGAATTCTTGGGCACCTATGCAAACACATCTCCGCTTAGTTTGAAGCAGTGGTTTAGTAGCATTCTCCTCGGAGTCCTTGGCATGCCAATTGCAGCAGCTTTAAAGATGATCCCCGTGTGA 3051 0.4218 MESYLNENFGDVKAKNSSEEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFINGLKLSSEYIVPEEVKAAGFEICADELGSIVDGRDVKKLKIHDGVEGIANKVSTSVNDGISTSEHLLNLRKEIYGINKFNESPIRGFWVFVWEALQDTTLMILALCALISLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDREKKKITVQVTRNGCRQKISIYDLLPGDVVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVSDRNRFLLSGTKVQDGSCKMLVTAVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLREGSQWTWSGDDAMEMVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACVCGKIKEVNSSKVSSDFSSDLPDSALAILLESIFNNTGGEVVKNKDEKIEILGSPTETALLEFGLSLGGDFLKERQVLKLVKVEPFNSVKKRMGVVLQLPNGSFRAHCKGASEIVLAACDKVVDSNGEIVPLDEDSINHLKDTIAKFAGEALRTLCLAYMDICDEFLVEGPIPIRGYTCIGIVGIKDPVRPGVRESVAICRSAGITVRMVTGDNIDTAKAIARECGILTDGIAIEGPEFREKSEEELLDIIPKIQVMARSSPMDKHALVKYLRTTFEEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKKPPVGRKGNFISNVMWRNILGQSMYQFVVIWFLQRRGKVAFHLDGPDSDLTLNTLIFNSFVFCQVFNEISSRDMERINVFEGILKNYVFVAVLTCTIIFQIVIVEFLGTYANTSPLSLKQWFSSILLGVLGMPIAAALKMIPV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00022 1016 Gene3D - 451 800 IPR023214 -
Gabi1235g00022 1016 Pfam E1-E2 ATPase 237 432 - -
Gabi1235g00022 1016 SFLD C1.7: P-type atpase like 436 807 - -
Gabi1235g00022 1016 SUPERFAMILY HAD-like 452 860 IPR036412 -
Gabi1235g00022 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 120 1015 IPR023298 -
Gabi1235g00022 1016 NCBIfam HAD-IC family P-type ATPase 394 478 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00022 1016 NCBIfam HAD-IC family P-type ATPase 724 836 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00022 1016 NCBIfam HAD-IC family P-type ATPase 206 377 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00022 1016 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Gabi1235g00022 1016 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Gabi1235g00022 1016 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Gabi1235g00022 1016 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Gabi1235g00022 1016 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Gabi1235g00022 1016 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Gabi1235g00022 1016 Gene3D - 145 337 - -
Gabi1235g00022 1016 FunFam Calcium-transporting ATPase 217 337 - -
Gabi1235g00022 1016 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
Gabi1235g00022 1016 SFLD p-type atpase 436 807 IPR044492 -
Gabi1235g00022 1016 Gene3D - 17 77 - -
Gabi1235g00022 1016 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00022 1016 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00022 1016 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1235g00022 1016 Pfam Cation transporting ATPase, C-terminus 840 1014 IPR006068 -
Gabi1235g00022 1016 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Gabi1235g00022 1016 Gene3D - 464 660 IPR023299 GO:0000166
Gabi1235g00022 1016 FunFam Calcium-transporting ATPase 649 800 - -
Gabi1235g00022 1016 Pfam Cation transport ATPase (P-type) 515 594 - -
Gabi1235g00022 1016 SUPERFAMILY Calcium ATPase, transduction domain A 238 334 IPR008250 -
Gabi1235g00022 1016 FunFam Calcium-transporting ATPase 464 660 - -
Gabi1235g00022 1016 CDD P-type_ATPase_Ca_PMCA-like 143 888 - -
Gabi1235g00022 1016 Gene3D - 169 1013 - -
Gabi1235g00022 1016 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Gabi1235g00022 1016 FunFam Calcium-transporting ATPase 17 77 - -
Gabi1235g00022 1016 FunFam Calcium-transporting ATPase 772 1016 - -
Gabi1235g00022 1016 NCBIfam calcium-translocating P-type ATPase, PMCA-type 112 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi1235g00022 1016 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Gabi1235g00022 1016 PANTHER CATION TRANSPORTING ATPASE 80 1015 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00022 Gabi-Chr1235 172640 185463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00022 1 1016 Primary Pumps ATPases AT1G27770 81.711 0.0 1703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00022 K01537 - gmx:100810758 1821.98