Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00021 ATGGAAACAGATATTCCGGCGACTTACACGTACATGGGACGGAGTATCAACGATGACTCCTCTTCGGCTTTCAGCGACTGCAACAGCGACAGATCCGGCGAATTCCCAACGGCTTCTTCCCTAAGCCGTGGCCTTCTGATCGCTTGCGCTTCCGACAATTCCGACGATCTCATTCGTCAGTTGGTTCTTCGTCTCGAGTCCTGTTCGATTGAGGAACAGAAACAAGCGACCATGGAGATCAGATTACTGGCCAAGAACAAACCAGAGAACCGCCTCAAAATCGCGAAAGCCGGCGCTATTAAGCCGTTAATTTCACTTACATCATCGCCGGACCTTCAACTTCAGGAGTACGGTGTTACGGCGATTTTGAATCTGTCGCTGTGCGAAGAGAACAAAGAGCTAATTGCTTTATCGGGAGCGATTAAGCCTCTTGTTGGAGCACTCAAGACAGGGACTCCAACGGCGAAGGAGAACGCAGCGTGTTCTCTGCTTCGTCTCTCGCAGGTAGAAGAGAACAAGGTGTCAATTGGAAGGTCAGGAGCCATTCCGCTCCTCGTGAACCTTCTAGAATACGGAGGTTTCCGCGGGAAGAAGGACGCGTCGACGGCGCTCTACTCGCTGTGTTCGGTGAAGGAGAACAAGATCAGGGCGGTGAAAGCGGGGATTATGAAGCCGTTGGTGGAATTGATGGCGGATTTGGGATCCAACATGGTGGACAAGTCTGCGTACGTGTTGAGCGTGCTGGCGTCGGTGGCGGAGGCGAGGACGGCGTTGGTGGATGAAGGAGGGATTCCTGTGCTGGTGGAAATCGTGGAGGTTGGGTCTCAAAGACAAAAGGAAATCGCTGTCGTAATTTTATTGCAGATTTGCGAGGACAGTATGGTTAATCGTAAGATGGTGTGTCGCGAAGGAGCCATTCCTCCATTGGTTGCTTTGTCGCAATCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGACACTAATAGAGCTTCTGCGGCAACCAAGATCCGGCAACGCCGCTGCCCGTACCCCAGAAATGTCAGCATAA 1047 0.5244 METDIPATYTYMGRSINDDSSSAFSDCNSDRSGEFPTASSLSRGLLIACASDNSDDLIRQLVLRLESCSIEEQKQATMEIRLLAKNKPENRLKIAKAGAIKPLISLTSSPDLQLQEYGVTAILNLSLCEENKELIALSGAIKPLVGALKTGTPTAKENAACSLLRLSQVEENKVSIGRSGAIPLLVNLLEYGGFRGKKDASTALYSLCSVKENKIRAVKAGIMKPLVELMADLGSNMVDKSAYVLSVLASVAEARTALVDEGGIPVLVEIVEVGSQRQKEIAVVILLQICEDSMVNRKMVCREGAIPPLVALSQSGTNRAKQKAETLIELLRQPRSGNAAARTPEMSA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00021 348 Gene3D - 43 196 IPR011989 -
Gabi1235g00021 348 Gene3D - 197 343 IPR011989 -
Gabi1235g00021 348 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 98 140 IPR000225 GO:0005515
Gabi1235g00021 348 SUPERFAMILY ARM repeat 54 330 IPR016024 -
Gabi1235g00021 348 PANTHER U BOX DOMAIN-CONTAINING 57 332 - -
Gabi1235g00021 348 SMART arm_5 169 209 IPR000225 GO:0005515
Gabi1235g00021 348 SMART arm_5 87 127 IPR000225 GO:0005515
Gabi1235g00021 348 SMART arm_5 251 291 IPR000225 GO:0005515
Gabi1235g00021 348 SMART arm_5 128 168 IPR000225 GO:0005515
Gabi1235g00021 348 SMART arm_5 292 333 IPR000225 GO:0005515
Gabi1235g00021 348 SMART arm_5 210 250 IPR000225 GO:0005515
Gabi1235g00021 348 Pfam Armadillo/beta-catenin-like repeat 171 209 IPR000225 GO:0005515
Gabi1235g00021 348 Pfam Armadillo/beta-catenin-like repeat 88 126 IPR000225 GO:0005515
Gabi1235g00021 348 FunFam RING-type E3 ubiquitin transferase 48 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00021 Gabi-Chr1235 148132 150574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00021 58 340 U-box Gene Family AT2G23140 50.883 2.83e-83 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00021 - - cpap:110811338 555.058