Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00020 ATGGAACATCTTGGTCCTGAAGCCTTCCCTGGTGAAGAATGGGGTTGGTTTGGCAGAACTCTTGCCATCGAAGAGCTTGATTACTCATCACAATTATTTGGTGAAAGCCCACTTGATGATGGGAACATTGGAATACAATCCATGTTTTGGTCCACCCCTGAAGCTGGGGGAAGTGAGAGTATGTTTTACTCTTTTGATGCTCACAACTCTAATTTGCAGTATATTTCTCAAAGTAACAATTGCCGTGACCCTACAAACTACCATTTCGGTTATCTTGATCAAGTGCTGACAAATAGTACATGTACATCCATGGATTTTTGCATGATGAATGAGAAAAACCCTGTCTCTAATTTCTCTTTTGTTCAATCACTCACTGACATTGAAATGAAAGAGAATGTCAAATTGACTGAAGATGAGAGAAGTGATAAATCAGAGAATTCTGATTACTGTACAGTGGAATCAATGTTTTTCTCTTCCAAGCAATTGCAGCTCAAGAGGAAACTTGATGTGCCAGAATTGGAGGTGTCTATAGAAGATAAAATAAACACAAACTCATCATATGGGAATGGTGCAAAGATGCATGAAGATAATGCTTCTCAGGAAAACAGTGGTGGAGATATTTCAGCATCTAAATCACCTGCGGCTCTCAACAAAAGAGCTAGAAGGGAATCAGCAACAGACCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCAAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCATTACGTTAAATTTTTGCAGCTCCAGATCAAGCTTCTAAGCTCTGATGATTTGTGGATGTACGCTCCGATTGCTTATAATGAACTTGACAGTGGACTTAATCTCATCCAGAAGATTTCTCCACCTCTATGA 933 0.3934 MEHLGPEAFPGEEWGWFGRTLAIEELDYSSQLFGESPLDDGNIGIQSMFWSTPEAGGSESMFYSFDAHNSNLQYISQSNNCRDPTNYHFGYLDQVLTNSTCTSMDFCMMNEKNPVSNFSFVQSLTDIEMKENVKLTEDERSDKSENSDYCTVESMFFSSKQLQLKRKLDVPELEVSIEDKINTNSSYGNGAKMHEDNASQENSGGDISASKSPAALNKRARRESATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNELDSGLNLIQKISPPL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00020 310 MobiDBLite consensus disorder prediction 216 231 - -
Gabi1235g00020 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 288 IPR036638 GO:0046983
Gabi1235g00020 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Gabi1235g00020 310 MobiDBLite consensus disorder prediction 184 210 - -
Gabi1235g00020 310 CDD bHLH_AtIND_like 225 287 - -
Gabi1235g00020 310 MobiDBLite consensus disorder prediction 184 231 - -
Gabi1235g00020 310 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 296 - -
Gabi1235g00020 310 FunFam Basic helix-loop-helix transcription factor 225 282 - -
Gabi1235g00020 310 SMART finulus 230 279 IPR011598 GO:0046983
Gabi1235g00020 310 Gene3D - 218 282 IPR036638 GO:0046983
Gabi1235g00020 310 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00020 Gabi-Chr1235 143485 145131 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00020 195 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 75.221 1.03e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1235g00020 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00020 - - gmx:100779202 291.967