Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00017 ATGGAAACTCTTGGAGCCTTTCCTGATGGAGAATGGGAATGCTTTCGCAGAATGTTTGCCATTGAAGAGCACAATGACTCACTACAATTAATTGGTCAAAGCTCACTTCTGCTTGGGGAAGATGATGTGAACATTGGAACACAATCCATGTTTTGCTTCACTCCTGAAGCTGGTGGAAATGAGAGTATGTTTTACCCTTTTGATGCTCACAACTCAAATTTGCAGTATGCTTCTCAAGAAAGCAATCACAGTAGCAATTGTAGTGGCCGTACTATCTTGGTGGCCAATCAGGGTCATACTAACTACCATTTCGATTATCCTGATCATGTGCTAGCTAATTATACCTCTACATCCATCGGAAATTGCTTGATGGATGAGAAAAAACCTGGCCCTTTTGTCCAATCGCTTACTGATATTGTAATGGAAGAGAATGTCATCTTGAATGAAGATGAGAAAAGTGACAGATTAGAGAATTCTGATCACAGTCAAATGGAACCTATTGTTTTTCCCACCAAGCAATTGCAGCCAAAAAGGATGCTTGATGTGCCAGAACTGGAAGTGCATGCAGAAGATAAAATAAACTCATATGGGAACCGTAAGAAAAAACCTCGTGTTTCAAAAGATGTGCAAAAATGCATGAAGAATGGACGGTCCAAGAAGAACCAGAAGCTTGATAGAAATGGAAACGAGGCAGAAGAGACTAATGCAGGTTCAGATGGACAGAGCTCTAGCAGTTATACCTCAGAGGAGGATAATGCTTCTCAGGAAAATAGTGGAGGAGCTACTTCGGCATCTAAATCACATGTGGCTCTAAACTTAAATGGGAAAACAAGAGCCAGTAGGGGATCAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAGAGAATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCCAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAGTCCATTACGTGAAATTTTTGCAGCTCCAGATCAAGGTAAAATAA 1020 0.4049 METLGAFPDGEWECFRRMFAIEEHNDSLQLIGQSSLLLGEDDVNIGTQSMFCFTPEAGGNESMFYPFDAHNSNLQYASQESNHSSNCSGRTILVANQGHTNYHFDYPDHVLANYTSTSIGNCLMDEKKPGPFVQSLTDIVMEENVILNEDEKSDRLENSDHSQMEPIVFPTKQLQPKRMLDVPELEVHAEDKINSYGNRKKKPRVSKDVQKCMKNGRSKKNQKLDRNGNEAEETNAGSDGQSSSSYTSEEDNASQENSGGATSASKSHVALNLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEDAVHYVKFLQLQIKVK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00017 339 Gene3D - 285 339 IPR036638 GO:0046983
Gabi1235g00017 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 102 338 - -
Gabi1235g00017 339 SMART finulus 289 338 IPR011598 GO:0046983
Gabi1235g00017 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 332 IPR011598 GO:0046983
Gabi1235g00017 339 MobiDBLite consensus disorder prediction 191 295 - -
Gabi1235g00017 339 MobiDBLite consensus disorder prediction 233 287 - -
Gabi1235g00017 339 CDD bHLH_AtIND_like 284 338 - -
Gabi1235g00017 339 MobiDBLite consensus disorder prediction 191 232 - -
Gabi1235g00017 339 Pfam Helix-loop-helix DNA-binding domain 293 333 IPR011598 GO:0046983
Gabi1235g00017 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 337 IPR036638 GO:0046983
Gabi1235g00017 339 FunFam Basic helix-loop-helix transcription factor 284 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00017 Gabi-Chr1235 126031 127350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00017 198 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 57.616 5.65e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1235g00017 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00017 - - qsa:O6P43_015996 362.459