Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00013 ATGGCTCTCGAAGCTCTCAAATCTCCCACCACCGCCACCCCATCCTTCAATACCCCCTTTGAAGAAGTCAATCTCCGCTACTTAGAGGCACCCTGGGCCAAGCGAAAACGTTCGAAGCGTACCCGAATGGATCACCAGCCTTCAGAGGAAGAGTACCTCGCTCTCTGCCTTATCATGCTCGCTCGCGGCGGCAACAGCGGAGGAACTTCACCGCCACCGCCACCGCCAACCAAGCTCAGTTATAAATGCTCTGTTTGCAACAAAGCGTTTTCCTCTTATCAAGCACTCGGTGGGCACAAGGCCAGCCACCGGAAACTCGCTGGCGGCGGCGCTGCGGAAGATCAGTCAACCTCCTCCGCCGTGACAACCAGTTCCGCATCCAACGGCGGAGGTAAGACCCACGAGTGTTCCATCTGCCACAAGTGTTTCCCCACGGGACAGGCCTTGGGAGGACACAAGCGTTGCCACTACGAAGGAGGTAGTAACAGCGCCGTCACTGCCTCGGAAGGTGTTGGGTCCACCCACACTGGGACCCACAGCCACCCCCGCGACTTCGATCTCAACCTTCCGGCTTTTCCGGACTTCTCAACCAAGTTCTTCGTGGACGACGAGGTCTCCAGCCCTCTACCAGTGAAGAAGCCCAAGATTGAATTCCCTCACTACTGA 666 0.5736 MALEALKSPTTATPSFNTPFEEVNLRYLEAPWAKRKRSKRTRMDHQPSEEEYLALCLIMLARGGNSGGTSPPPPPPTXKLSYKCSVCNKAFSSYQALGGHKASHRKLAGGGAAEDQSTSSAVTTSSASNGGGKTHECSICHKCFPTGQALGGHKRCHYEGGSNSAVTASEGVGSTHTGTHSHPRDFDLNLPAFPDFSTKFFVDDEVSSPLPVKKPKIEFPHY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00013 222 SUPERFAMILY beta-beta-alpha zinc fingers 82 157 IPR036236 -
Gabi1235g00013 222 MobiDBLite consensus disorder prediction 162 179 - -
Gabi1235g00013 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 157 IPR013087 -
Gabi1235g00013 222 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Gabi1235g00013 222 MobiDBLite consensus disorder prediction 105 128 - -
Gabi1235g00013 222 Pfam C2H2-type zinc finger 82 106 - -
Gabi1235g00013 222 Pfam C2H2-type zinc finger 135 158 - -
Gabi1235g00013 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Gabi1235g00013 222 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 192 IPR044653 GO:0003700
Gabi1235g00013 222 Gene3D Classic Zinc Finger 80 157 - -
Gabi1235g00013 222 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Gabi1235g00013 222 MobiDBLite consensus disorder prediction 113 128 - -
Gabi1235g00013 222 SMART c2h2final6 135 157 IPR013087 -
Gabi1235g00013 222 SMART c2h2final6 82 104 IPR013087 -
Gabi1235g00013 222 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00013 Gabi-Chr1235 101406 102366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00013 1 220 C2H2 Transcription Factor Family AT1G27730 58.009 1.18e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1235g00013 zf-C2H2_6 2.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00013 - - gmx:100776038 310.457