Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1235g00012 ATGAGTTGCAACGGTTGCCGAGTCCTGCGCAAAGGGTGCAGTGAGGGGTGCACCCTGAGGTCGTGCTTGCAGTGGATCGATTCCCCTGAAGCACAAGGCCATGCAACTCTCTTCGTCGCTAAATTCTTCGGCCGTAGCGACCTAATCTCTTTCATTTCCTCAGTCCCCCCAAACAACAGACCTGCGCTGTTTCAGTCTCTGCTGTTCGAAGCGTGCGGCAGAACAATTAATCCCGTCAACGGTGCAGTCGGATTAATGTGGAGCGGTAACTGGCACGTGTGCCAGGCCGCCGTGGACACGGTGCTCTCCGGAGGCGTTCTTCGTCCGTTACCGGAGGTTATGACGCCGACCATTGATGAGTCATCAGACAGCATATACTCTCAATTCCGGCCGTTGGAGATGATTCAAGAGTCTTACTACAACAGCACAACCTTGGAGGCGCTGAATAAGGGCAGTGATGCAACGCCACAAGCTACGTCATTGGTTACTGGAGAATCGGAGATGACGAGCTATGACATTTACAGCGAGAATGAGAAAAAGCTTTTGAATCTGTTCGTGTAA 561 0.5223 MSCNGCRVLRKGCSEGCTLRSCLQWIDSPEAQGHATLFVAKFFGRSDLISFISSVPPNNRPALFQSLLFEACGRTINPVNGAVGLMWSGNWHVCQAAVDTVLSGGVLRPLPEVMTPTIDESSDSIYSQFRPLEMIQESYYNSTTLEALNKGSDATPQATSLVTGESEMTSYDIYSENEKKLLNLFV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1235g00012 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 125 - -
Gabi1235g00012 186 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Gabi1235g00012 186 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1235g00012 Gabi-Chr1235 87380 88052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1235g00012 1 123 AS2 family AT3G49940 70.455 5.79e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1235g00012 LOB 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1235g00012 - - qsa:O6P43_015999 238.424