Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1234g00010 ATGGTTGAGTCAACCATGTCAAAGGCAATGATGGAGGAAGTAATGGCTACTTGGTCAAATGAGTCAGAGGATGACCTTGTGAGAGAGCTAATAGATGAAGAGTCTTCTCTTCTTATGCTGCAAGAGGAGGCAACAACTGAACCCAACACAAATGCTTCTTTAAGTGACCAAGCTTTTAATAGGTTCATCTCCAATATTAACTCAGGGCCTACCATCACAGATATTGAAAATGCTTTATCAGTCACCAAACAAAGAGAGCACTTCCAACAGCTCTCATCAACAAGAGTTTCCATATTGGAAAGAGGTTTGAGCAAGATTGAAAATAAGTATACACTGAAAATCAAATGCTTTGGCAATGGAATGGGTGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCTCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCAATGAAGACCCAGACACTCTTATCATCACATATGAAGGGCTCCACTTGCACTTTGCTTACCCTTACTTTCTCAATGGCCAACCAGACCAATCTCATTCCCATTCCCATCAACCAATCAAGAAGTCCAAGCCTACCTCTTCACAAGGCCAAGCCCAAGACCATAAAGAACAACATGTTCATGAAGGCCTGAATACTCAAGAAGCCCAAGAAGAAGCTCCTCTGGGCCTTGTATCATCCACTTTACTTGACACTCCACAAGATATGGCCCACGAAAATTTGGGCTCCCAAGGGCTGCTTGAAGACATGGTGCCATTCATGGTTAGGAACCCCACAAACAATACCAATAGTGCTTACTCGAAGTTTTCTTGTTCTTCGTACGGTTCTTCTCCAACATTACCTCCTATGTGGACTTCTGGTTATTCTACCTCCTGTTATACCATTGGCTTAAATTCCAGCACTTAG 948 0.4272 MVESTMSKAMMEEVMATWSNESEDDLVRELIDEESSLLMLQEEATTEPNTNASLSDQAFNRFISNINSGPTITDIENALSVTKQREHFQQLSSTRVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSSNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLNGQPDQSHSHSHQPIKKSKPTSSQGQAQDHKEQHVHEGLNTQEAQEEAPLGLVSSTLLDTPQDMAHENLGSQGLLEDMVPFMVRNPTNNTNSAYSKFSCSSYGSSPTLPPMWTSGYSTSCYTIGLNSST 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1234g00010 315 SUPERFAMILY WRKY DNA-binding domain 120 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1234g00010 315 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1234g00010 315 Pfam WRKY DNA -binding domain 123 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1234g00010 315 Gene3D WRKY domain 118 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1234g00010 315 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1234g00010 315 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 216 IPR044810 GO:0003700
Gabi1234g00010 315 MobiDBLite consensus disorder prediction 189 231 - -
Gabi1234g00010 315 FunFam WRKY transcription factor 109 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1234g00010 Gabi-Chr1234 165904 168237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1234g00010 11 276 WRKY Transcription Factor Family AT5G43290 40.625 1.41e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi1234g00010 WRKY 1.3e-25 CL0274