Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1234g00006 ATGGCCAAAAGATACGAGGGACTTTCTATAGGAATTGACCTTGGCACAACCTACTCATGTGTTGCTACATGGCAAGAGCAAAACGATCGAGCGGAGATCATACATAATGAACAAGGGAACCAAACCACACCTTCTTGTGTTGCTTTTACTAATGACCAACGGTTGATTGGAGATGCTGCAAAAAATCAGGCTGCCACTAACCCATCCAACACTGTCTTTGATGTAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTATCCAAGATGATGTAAACTTGTGGCCATTTAAGGTCATTGCTGGTAGTGATGACAAACCCACAATTGTTGTAAAGTACAAGGGTGAGGAGAAGCACCTTGCTGCTGAGGAAATCTCATCTATGATTCTCACAAAAATGCGGGAGATTGCAGAAGCATTTTTGGAGTCACCAGTAAAGAATGCAGTTGTGACTGTCCCTGCTTATTTCAATGACTCTCAACGTCAAGCTACCAAAGATGCTGGAGTCATTGCTGGCCTCAATGTTATGAAGATAATCAATGAACCCACTGCTGCAGCTCTTGCATATGGGCTTCAAAAGAGAGCTGATTTAGTTGGAGAACGAAATGTTTTCATCTTTGATCTTGGTGGTGGAACTTTTGATGTGTCTCTTCTCACAATCAAGGATGATACCTTCAAAGTTAAGGCCACGGCTGGAGACACTCACCTTGGAGGAGAGGACTTTGATAACAGAATGGTGAATCACTTCATGCATGAGTTCAACAGGAAGAACAAAGTGGACATCAGTGGGAACCCAAAAGCCATGAGGAGGTTGAGAACTGCATGTGAAAGGGCAAAAAGGATACTTTCATTTGCAACTGAGACCACAATTGAGGTAGATGCAATATATCAGGGTCTTGATTTCTCTTCAGTAGTCACACGTGCCAGGTTTGAGAAACTCAACATTGAACTCTTTAGAATGTGTATGGATACTGTTGAGAGGTGTCTTAGTGATGCTAAGATGGACAAGAATGAAGTACATGATGTTGTACTTGTTGGTGGGTCATCTAGGATTCCCAAAGTGCAAGAGCTATTGCAAGAATTCTTCAAAGGGAAGGACCTATGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTTTACTGTCTACAGAAGAAATTCAAAGATTGATTCAAGAAGCTGAGATGTATAAGGCTGAAGATAGAGAGTACAAGAAGAAAGTCAAAGCAATGAATGCTTTGAATGAATACGCTTACAAGGTGAAGAATGCTGTGAAGGATTCCAAGTTTAGTGCTAAGATTATAGCATTAGACAAGCAGAAACTTAAGGATGCAATCAGAGAAGCCAGAAATTTGCTTGATGGTAACCTGCAGGCCGATTCATTTGTGTTTGAGACCTGTATGAACAGGCTAGTGAGCATTTTTGAACCAATTAGAGTGAAGTTGAACCATGGATGGAATGATGAGGAAAGTGATGTGGATGATGATTAA 1509 0.4148 MAKRYEGLSIGIDLGTTYSCVATWQEQNDRAEIIHNEQGNQTTPSCVAFTNDQRLIGDAAKNQAATNPSNTVFDVKRLIGRKYSDSIIQDDVNLWPFKVIAGSDDKPTIVVKYKGEEKHLAAEEISSMILTKMREIAEAFLESPVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMKIINEPTAAALAYGLQKRADLVGERNVFIFDLGGGTFDVSLLTIKDDTFKVKATAGDTHLGGEDFDNRMVNHFMHEFNRKNKVDISGNPKAMRRLRTACERAKRILSFATETTIEVDAIYQGLDFSSVVTRARFEKLNIELFRMCMDTVERCLSDAKMDKNEVHDVVLVGGSSRIPKVQELLQEFFKGKDLCKSINPDEAVAYGAAVQAALLSTEEIQRLIQEAEMYKAEDREYKKKVKAMNALNEYAYKVKNAVKDSKFSAKIIALDKQKLKDAIREARNLLDGNLQADSFVFETCMNRLVSIFEPIRVKLNHGWNDEESDVDDD 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1234g00006 502 Gene3D - 194 368 - -
Gabi1234g00006 502 Gene3D - 73 128 - -
Gabi1234g00006 502 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Gabi1234g00006 502 FunFam Heat shock protein 70 10 201 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 371 391 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 8 21 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 339 355 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 38 50 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 148 168 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 211 221 - -
Gabi1234g00006 502 PRINTS 70kDa heat shock protein signature 60 68 - -
Gabi1234g00006 502 Pfam Hsp70 protein 10 390 IPR013126 GO:0005524|GO:0140662
Gabi1234g00006 502 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gabi1234g00006 502 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 416 491 IPR029048 -
Gabi1234g00006 502 PANTHER HEAT SHOCK PROTEIN 70KDA 10 389 IPR013126 GO:0005524|GO:0140662
Gabi1234g00006 502 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Gabi1234g00006 502 Coils Coil 393 413 - -
Gabi1234g00006 502 FunFam heat shock 70 kDa protein-like 73 128 - -
Gabi1234g00006 502 Gene3D Actin; Chain A, domain 4 237 320 - -
Gabi1234g00006 502 FunFam Heat shock 70 kDa 237 320 - -
Gabi1234g00006 502 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Gabi1234g00006 502 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Gabi1234g00006 502 Gene3D - 388 491 IPR029048 -
Gabi1234g00006 502 Gene3D - 10 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1234g00006 Gabi-Chr1234 95817 98489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1234g00006 1 488 Calmodulin-binding Proteins AT5G02500 68.852 0.0 704