Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1233g00009 ATGGGAGAAAGAATTCCAGTATTCCTTCTACTCATTTTCAGTTATTTTTTGATTGCAGTAGCAAGAACAGCGGATCAGGATCGCACTGCTTTTACAGCTATAAAAAGTGAGTGGCAGAACATCCCATCTAATTGGGTGGACTCATCAGATCCTTGTGGCGATGATTGGGATGGCATTCAGTGCTCCTTTGGAAGCGTTATCTCCATAACATTAGTGAACAGGAATTTGAGTGGCCAGCTTCCTTCAGAAATTGGATTACTATCTCAATTGCAGACTTTGGATCTGTCTTACAATAAGAATCTAATAGGACGGCTTCCCAATGAAATTGGAAACCTTAAAAAGCTGCAAGTTTTAACTCTTATTGGTTGTGGTTTCAATGATGCTATCCCAGATACAATAGGAAACCTACAGAGGCTTGTCCAACTGTCTTTAAATTCTAATAAGTTCTATGGGCCAATTCCACCTTCCATTGGTAGACTCTCAAGAATTACTTGGCTTGACTTATCTGAAAACCTTCTTTATGGGCCCATCCCAATATCAAATGGAACTACTCCTGGCCTTGATATGCTGTTCAATTGTCTGCACTTTCATTTTTGGAGCAATAAGCTTTCAGGCAATATTCCTCCTCAACTTTTTAGCTCGGGAATGTCTCTGAAACATGCGCTTTTTGAAAGCAACCAACTTAATGGCAGCATTCCATCCACACTTGGACTTGTCCAGTCTCTGGAGGTGGTGCGCCTTGATAGTAACTTGTTAAGTGGAAATATACCTCCGAACATCAGCAATCTTGGAAATCTGAGGGATTTGTTCCTGTCCAACAACAACCTATCTGGTCCCCTGCCAAACCTTACTGGAATGAATTCTCTCAACTACCTGGATATGAGCAATAACAGTTTTGATCCTTCAGACATTCCTCTCTGGTTATCAACTCTACAGTATCTGACAACAATAGTAATGGAGAATACAAGTCTTAAAGGAACTATTCCTGTTTCTTTGTTCAGCCTGGTTCAGTTACAGACAGTGGATCTTAAAGACAACCAGCTGAGTGGCACTTTGGATATTGGCACATCCATCAGCAGCCAATTGGAGCTCCTTGATTTGCAGAATAATTCAATCGAAGAATTTAGTCCACAAATTGCTGTCTCCCAAGTAAAGATAATACTTGTGAATAATCCGTTTTGCCAAGAAACAGGAGCTGGAAAGACTTTTTGCCCCACTGCACAACCCAACGGCTCATCTACAATGCCATCAAATAACTGTGTGGGTGTTGCCTGCAGCCCAGACCAGATATTAAGCCCCAACTGCATATGTGCTTACCCATTTACAGGACCTTTAATATTCACAGCTCCTTCCTTCTCAAACGTGGGAAACAAGTCAGTCTCTGGAAAGCTGGAGTCATCTCTGATGCATTTTTTTAATTCGAGTGGTTTACCCGTGGATTCAGTTCATGCAATCTTTCAAAAGAAGAGTGAATTGCAGTATCTTTATTACACTTTAGAAGTATTTCCATTTGGCCAAAAAGTTTTCAATCAAACAGGGATTTCTGATATAGTCTTTCAGTTTACCAGCCAGACATATAAGTCTCCTCCAAATTTCGGACCATATAGATTCATTCCTGATAACTATGAATACTATATGAATGGTTCAGAAAGTCCTCCAGCGTCTGGTACACCGTCTGGTACATCTTCAAACATTGCCATCATAGCTGGAGCTGCGGTTGGTGGTTCTTTCCTGCTGGTCTTATTACTCCTTATAAGTGCTTATGCTTTCCGCAAAAATAAAAAGGGAAAAAGAGAAACTGGGAAAAACAATCCTTTTGAAGAATGGGATCTGCATGAGAGCAATAATAGCATCCCACAGTTAAAAGGAGCAAGGTGCTTCACTTTCGAAGAGATTCAGAGCTGCACCAAAAACTTTTCACTGGTCAATAATATTGGATCTGGGGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAACGGGCAACTAGTTGCAGTAAAACGAGCTCAAAAGGACTCTATGCAGGGAGGACTGGAGTTCAAAACTGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTACCCTTGTAGGTTTCTGCTTTGATCAAGGAGAACAAATGCTGGTTTATGAGTATGTTACAAATGGTACTTTGAAGGATGCTCTTTCAGGTAAGTCAGGAATTAGATTGGACTGGATAAGAAGGCTAAAAATAACCCTTGGTGCTGCCAGGGGGCTGGATTATCTCCATGTGCATGCCAATCCTCGTATCATACACAGGGACATCAAATCCAGTAACATTTTACTGGATGAGCGCTTGAATGCTAGAGTATCTGATTTTGGTCTCTCCAAGCCTTTGGGTGATGGTGACAAAGGCTATATTACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTATATGACTCAACAGTTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGCTAATGACTGCAAGAAGGCCAATAGAACGAGGGAAATATATTGTGAAAGTGGTTAGTAGTGCTATTGACAAGACAAAAGAGGTATGTGGTCTAAAGGAAATTCTTGATCCAGCCATTGATTTGGGGACAACACTGAACGATTTTGAGAAGTTTGTGGATCTTGCAATGCAATGTGTTAATGAGTCAAGTTCTAACAGGCCTTCAATGAATTCTGTGGTGAAAGAAATTGAAAACATGTTGCTGTTGGCTGGTTCAAACCCCAATGCTGAATCAGCATCCACTTCATCTAGTTATAACTTAAGTAAAGGGAGTTCCAAGCATCCTTACGATGAGTACTTTGATTCAAGTGTGATAATTCCTCGTGCATAA 2865 0.4084 MGERIPVFLLLIFSYFLIAVARTADQDRTAFTAIKSEWQNIPSNWVDSSDPCGDDWDGIQCSFGSVISITLVNRNLSGQLPSEIGLLSQLQTLDLSYNKNLIGRLPNEIGNLKKLQVLTLIGCGFNDAIPDTIGNLQRLVQLSLNSNKFYGPIPPSIGRLSRITWLDLSENLLYGPIPISNGTTPGLDMLFNCLHFHFWSNKLSGNIPPQLFSSGMSLKHALFESNQLNGSIPSTLGLVQSLEVVRLDSNLLSGNIPPNISNLGNLRDLFLSNNNLSGPLPNLTGMNSLNYLDMSNNSFDPSDIPLWLSTLQYLTTIVMENTSLKGTIPVSLFSLVQLQTVDLKDNQLSGTLDIGTSISSQLELLDLQNNSIEEFSPQIAVSQVKIILVNNPFCQETGAGKTFCPTAQPNGSSTMPSNNCVGVACSPDQILSPNCICAYPFTGPLIFTAPSFSNVGNKSVSGKLESSLMHFFNSSGLPVDSVHAIFQKKSELQYLYYTLEVFPFGQKVFNQTGISDIVFQFTSQTYKSPPNFGPYRFIPDNYEYYMNGSESPPASGTPSGTSSNIAIIAGAAVGGSFLLVLLLLISAYAFRKNKKGKRETGKNNPFEEWDLHESNNSIPQLKGARCFTFEEIQSCTKNFSLVNNIGSGGYGKVYRGTLPNGQLVAVKRAQKDSMQGGLEFKTEIELLSRVHHKNLVTLVGFCFDQGEQMLVYEYVTNGTLKDALSGKSGIRLDWIRRLKITLGAARGLDYLHVHANPRIIHRDIKSSNILLDERLNARVSDFGLSKPLGDGDKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELMTARRPIERGKYIVKVVSSAIDKTKEVCGLKEILDPAIDLGTTLNDFEKFVDLAMQCVNESSSNRPSMNSVVKEIENMLLLAGSNPNAESASTSSSYNLSKGSSKHPYDEYFDSSVIIPRA 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1233g00009 954 Gene3D Phosphorylase Kinase; domain 1 609 714 - -
Gabi1233g00009 954 Gene3D Transferase(Phosphotransferase) domain 1 715 927 - -
Gabi1233g00009 954 ProSiteProfiles Leucine-rich repeat profile. 265 287 IPR001611 GO:0005515
Gabi1233g00009 954 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 715 924 - -
Gabi1233g00009 954 SUPERFAMILY Protein kinase-like (PK-like) 625 931 IPR011009 -
Gabi1233g00009 954 FunFam Leucine-rich repeat protein kinase family protein 605 714 - -
Gabi1233g00009 954 ProSiteProfiles Protein kinase domain profile. 639 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1233g00009 954 CDD STKc_IRAK 645 911 - -
Gabi1233g00009 954 MobiDBLite consensus disorder prediction 919 936 - -
Gabi1233g00009 954 SMART serkin_6 639 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1233g00009 954 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Gabi1233g00009 954 Gene3D Ribonuclease Inhibitor 183 283 IPR032675 -
Gabi1233g00009 954 PANTHER RECEPTOR-LIKE PROTEIN 55 38 911 - -
Gabi1233g00009 954 Gene3D Ribonuclease Inhibitor 284 414 IPR032675 -
Gabi1233g00009 954 FunFam Leucine-rich repeat family protein 26 182 - -
Gabi1233g00009 954 MobiDBLite consensus disorder prediction 919 938 - -
Gabi1233g00009 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Gabi1233g00009 954 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Gabi1233g00009 954 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524
Gabi1233g00009 954 SUPERFAMILY L domain-like 36 385 - -
Gabi1233g00009 954 Pfam Protein kinase domain 641 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1233g00009 Gabi-Chr1233 94367 108417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1233g00009 1 941 Receptor kinase-like Gene Family AT5G49760 54.641 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gabi1233g00009 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1233g00009 - - aip:107638780 1256.12