LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1233g00008	ATGGGTGAAAGAATACTAGTACCATTGGTGCTTTTGTTCAATTTTTTGTTGTCTGCAGTAGCACAAGATGTTACCAATGATTTTAGAGCCCTAGAGTCTCTAAGGGATTCCTGGCAGAGCACAACTCCTAGTTGGGTGGGTTCAGATCCTTGCAATGGTTGGGATGGCATTAAGTGCAAAAACTCACGTGTAATTTCCATATCATTACCAGGCACTGGTTTGACAGGCCAGCTTTCAGGAGATATTGGATCACTTTCTGAATTGGAGACTCTGGATCTCTCATACAATAGGGACCTAACAGGACCACTTCCACAAGAAATTGGAAATTTGAAGAAGCTATCAAAATTAATTCTTGTTGGTTGTGGTTTTACTGGTCCTATTCCAGATGAAATAGGATCCCTACAACAGCTTGTTTTCTTATCTTTAAACTCCAACTACTTTGTTGGACCAATTCCCCCATCTATTGGCAATTTATCAAATCTTATTTGGCTAGATTTAACTGATAATCAGCTTGATGGATCCATCCCAGTATCTAGTCGATCTACTCCTGGTCTTGATATGCTACTCACTACAAAGCACTTTCATCTTGGGAAGAATAAGCTCTCAGGGGAAATTCCTTCTCAACTTTTTAGCTCAAAAATGACTCTGATACATGTGATTTTTGAGAGCAATCAACTAATTGGCAGCATTCCAGAAACGCTTGGACTTGTTAAGAGTCTGGTGGTGGTGCGCTTGGAAAAGAATTCATTAGATGGATATGTGCCTCAGAACCTCAACAACCTTACGAATGTTACAGACCTGTTGTTGTCCAACAATAAGCTGCAAGGTTCCCTGCCAAACCTTACAGGGATGAACTCCCTAGAATACTTGGATTTGAGCAACAATAACTTTGATCCGTCAGGTTTTCCACCATGGCTTTCAAATATGAAGAACTTAAGGACATTGCTGATGGAAAGTGTGAACCTTTATGGGAAAATTCCTGTTCCTTTGTTTAGTCTTGCCTATTTGGAAAATGTTGTGCTAAAAAGCAACAAACTTGATGGAACCTTGGATATTGGCACCAACTACAGCAAACAACTGCAACTTATTGACCTGCAATCAAATTCAATTGAAGACTTCAAGCAACAAAATGAATTCCCCAATATCACGATAATACTTGTGTACAACCCAATTTGTGATGAAACAGGAGCTACTGGGACTTACTGCACCAAGCAAAATACCTTAGATACAAAACAACAGAAGAACTGTCTGGCTGACATTTGCAGTTCAAATCAGATTCTCAGTCCCAAGTGCAAATGCGCATATCCATATACAGGAACTTTAACTTTCAGATCACCTTCTTTGTTTGCCTGGAGAAATAAATCTTCCTTGGAGGAAGATCTTTTCCATGCTTTTCAATCCCTTCACCTACCAGTGGATTCAGTTTCTTTAATCATTCCTCCTGAAGATCCATTTCAATCTTTTGAGTTTATCATACAAATCTTCCCATTAGGCCAAGATCATTTCAACCAGCAAGAAATTTCTAGTATAAGCTCTTTGCTTGGCAACCTAAGTACTAATAGACCATATACTTTTGTTACTGAAAACCAAGGACCTAAGGAGTCGAGTAACTCATCAAACATTGCCTTAATTATTGTTGCGGCTATTGGTGGTTCTTCTTTCCTGCTAGTGTTATTACTAGCAGGTGTTTATGCTTTCCGCCAGAAGAGAAGGGCTGAAAGAGCAATTTCTCTAAGCAATCCTTTTGGAAACTGGGATCCAAATAAAAGCAACTGCGGCATCCCTCAGTTAAAAGCAACAAGGCAGTTCTCTTTTAAAGAACTTAAGAAATACACAAACAACTTTTCACAAGCCAATGATATTGGATCAGGGGGTTATGGAAAGGTTTACCGTGGAACTCTTCCCTGTGGGCAACTGATAGCCATAAAACGAGCTCAAAAAGGATCAAAGCAGGGGGTGCTAGAATTTAAAGCTGAGATTGAACTCCTTTCAAGGGTCCACCACAAGAATGTGGTAAGCCTTGTGGGATTCTGCTTTGAACGAGAAGAACAAATGCTGGTTTACGAGTTTGTTCCAAATGGAACTTTGAAGGATTTCATCTCAGGGACATCAGGATATGTATTGGGCTGGAGTAGAAGGCTAAAAGTAGCACTTGGTGCTGCTTGGGGTTTGGCTTATCTTCATGGACATGCCAATCCTCCTATTATACACAGGGATATCAAATCAAACAACATTCTGTTGGATGAGAACTTTAATGCAAAAGTCGCTGATTTTGGTCTCTCCAAGTCTATCTTAGATTGTGAAAAAGATCATGTCACCACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCGGATTATTATTCTAGTCAGCAGTTGACTGAAAAGAGCGATGTTTATAGTTTTGGAGTGATAATGCTGGAGCTGATAACTGCAAAAAAGCCAATAGAGCGAGGGAAATACATTGTGAAAGTGGTCAGGAATGCAATTGATAAGACAAAAGACTTTTATGGTCTTCATGAACTTATTGACCCAACCATCGGTTCAGGATCAACAATGAAAGGTTTTGAGAAGTTTGTGGACCTTGCAATGAAGTGTGTTGAAGAGTCAGGAGCTGACAGGCCTACAATGAGTGATGTGGTTAAAGAAATTGAAGACATGTTGCAGTCTGCTGGTTTGAACTCAACATCTGAACCAGAAGTATCTACTTCATCTATTTATAAATGTTATGAGGTAAGTATGGGGAGTCCCCACCATCCTTACAGCAATGAGTCCTTTGATTCAAGTACAGAACATTTGCATCCAAAAAATGAGCCTAGTTAA	2823	0.3971	MGERILVPLVLLFNFLLSAVAQDVTNDFRALESLRDSWQSTTPSWVGSDPCNGWDGIKCKNSRVISISLPGTGLTGQLSGDIGSLSELETLDLSYNRDLTGPLPQEIGNLKKLSKLILVGCGFTGPIPDEIGSLQQLVFLSLNSNYFVGPIPPSIGNLSNLIWLDLTDNQLDGSIPVSSRSTPGLDMLLTTKHFHLGKNKLSGEIPSQLFSSKMTLIHVIFESNQLIGSIPETLGLVKSLVVVRLEKNSLDGYVPQNLNNLTNVTDLLLSNNKLQGSLPNLTGMNSLEYLDLSNNNFDPSGFPPWLSNMKNLRTLLMESVNLYGKIPVPLFSLAYLENVVLKSNKLDGTLDIGTNYSKQLQLIDLQSNSIEDFKQQNEFPNITIILVYNPICDETGATGTYCTKQNTLDTKQQKNCLADICSSNQILSPKCKCAYPYTGTLTFRSPSLFAWRNKSSLEEDLFHAFQSLHLPVDSVSLIIPPEDPFQSFEFIIQIFPLGQDHFNQQEISSISSLLGNLSTNRPYTFVTENQGPKESSNSSNIALIIVAAIGGSSFLLVLLLAGVYAFRQKRRAERAISLSNPFGNWDPNKSNCGIPQLKATRQFSFKELKKYTNNFSQANDIGSGGYGKVYRGTLPCGQLIAIKRAQKGSKQGVLEFKAEIELLSRVHHKNVVSLVGFCFEREEQMLVYEFVPNGTLKDFISGTSGYVLGWSRRLKVALGAAWGLAYLHGHANPPIIHRDIKSNNILLDENFNAKVADFGLSKSILDCEKDHVTTQVKGTMGYLDPDYYSSQQLTEKSDVYSFGVIMLELITAKKPIERGKYIVKVVRNAIDKTKDFYGLHELIDPTIGSGSTMKGFEKFVDLAMKCVEESGADRPTMSDVVKEIEDMLQSAGLNSTSEPEVSTSSIYKCYEVSMGSPHHPYSNESFDSSTEHLHPKNEPS	940

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1233g00008	940	ProSiteProfiles	Protein kinase domain profile.	615	888	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1233g00008	940	Gene3D	Ribonuclease Inhibitor	192	279	IPR032675	-
	Gabi1233g00008	940	PANTHER	RECEPTOR-LIKE PROTEIN 55	35	887	-	-
	Gabi1233g00008	940	FunFam	Leucine-rich repeat protein kinase family protein	584	690	-	-
	Gabi1233g00008	940	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	735	747	IPR008271	GO:0004672\|GO:0006468
	Gabi1233g00008	940	Gene3D	Phosphorylase Kinase; domain 1	587	690	-	-
	Gabi1233g00008	940	FunFam	Leucine-rich repeat protein kinase family protein	181	280	-	-
	Gabi1233g00008	940	SUPERFAMILY	Protein kinase-like (PK-like)	601	922	IPR011009	-
	Gabi1233g00008	940	Pfam	Protein tyrosine and serine/threonine kinase	618	883	IPR001245	GO:0004672\|GO:0006468
	Gabi1233g00008	940	Gene3D	Ribonuclease Inhibitor	280	427	IPR032675	-
	Gabi1233g00008	940	ProSitePatterns	Protein kinases ATP-binding region signature.	621	643	IPR017441	GO:0005524
	Gabi1233g00008	940	SUPERFAMILY	L domain-like	44	391	-	-
	Gabi1233g00008	940	CDD	STKc_IRAK	621	887	-	-
	Gabi1233g00008	940	MobiDBLite	consensus disorder prediction	920	940	-	-
	Gabi1233g00008	940	FunFam	Leucine-rich repeat family protein	26	180	-	-
	Gabi1233g00008	940	Gene3D	Transferase(Phosphotransferase) domain 1	691	908	-	-
	Gabi1233g00008	940	SMART	serkin_6	615	888	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1233g00008	940	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	691	900	-	-
	Gabi1233g00008	940	Gene3D	Ribonuclease Inhibitor	22	184	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1233g00008	Gabi-Chr1233	84445	90961	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1233g00008	9	939	Receptor kinase-like Gene Family	AT5G49760	53.466	0.0	901

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Gabi1233g00008		PK_Tyr_Ser-Thr	4e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1233g00008	-		-	gmx:100810323	1392.48