Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1233g00006 ATGGAAGAGACCTCTGTTTGCTGCGAACAATTGCCAGATGGGGAATGCATTGAGGTTCGGAAAGAAGAAGATGGTGCACTAATTGAATTAGATTGTCAAAATGGTTTTTCTGAAGAGAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTGGGGTTTCGTGTAAGGGTGAAGAATTCATGGTTTAAGCGAAATAGCAGAGAAAAATATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAATAAAAGATGTTAACCATTTGAGAAAAGAGACAAGAACTGGTTGTCCTGCGATGATAAGGATGAGGTTAATGGATTCTCAAAGATGGAGGATACTTGAGGTTACAAGTGAACATAACCACATGTTAGGTGCTAAGATACACAAATCGGTTAAGAAGATGGGAACTGGAACCAAAAGGAAGACGTTGCCTAGTTCTGATGCTGAGGCGCAAACAATTAAGTTGTACCGTGCTCTTGTGATAGATGCAGGAGGTAGTGGTAATTCAAACTTCAGTGCAAGAGATGACATAACTTTCCCTGAATTTTCTAATAAGTTGAACCTTAAAAAAGGTGACACACAAGCCATTTATAATTTCCTATGCCGTATGCAGTTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGATGAAGGGCATTTGAGGAATGCATTCTGGGTTGATGCTAGGTCCAGGGCTGCTTGTGGTTATTTTTGTGATGTTATATATTTTGACAACACTTATTTGTCAAACAAATATGAAATCCCTCTTGTAGCTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGCTGTGGCCTGCTTGCTGGTGAAACAACAGAGTCTTATAGATGGTTGTTTACAGCATGGGTTACATGTATGTCAGGACGTTCTCCCCAAACTATTATTACTGACAGGTGCAAGGCTTTGCAGAGTGCAATTGTAGAAGTTTTTCCTAGAGCTCAACATCGTTTTGGCTTGTCATTAATAATGAAAAAAGTACCAGAAAAATTAGGGGGGTTGCACAATTATGATGCGATCCGGAAAGCACTGATTAAAGCAGTTTATGAGACATTGAAAGTGATTGAATTTGAAACAGCATGGGGATTTATGATTCAGCGTTTTGGAGTTAGTGACCATGAGTGGCTTCGTTCTCTATATGAAGATCGAGTACGTTGGGCTCCGGTATATTTGAAGGACACTTTTTTTGCTGGAATGTCTGCAGCCCGCCCTAGTGAGACCATTAGTCCATTTTTCGATAGATATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTTGCTGATATTGAATCAAGAAGTTCAAGCCCCTTGCTGAAAACGAGATGTTCTTTTGAACTGCAGCTCTCTAGATTGTACACCAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCCCGATCATAATCTTCTTGGTCAAGGAGCGTGTTTTGATCGATGGAAACAGACGGGAGATTAGGGATTTTGAAGTTCTCTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTGTAGCTGCTTTAATTTTTATGGATACTTATGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAGGAGATACCTTACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCGCCTTTATGTTCCTGATCACAGCTCTGGTAGTGCTGAGGATACTGACCGTATTCAATGGTCCAGTCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGGATAATTTCTCTAGACCATTACAATGTAGCGTTGCAGGTTTTTGAAAAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGACGCTGTTTTACTTTGGTCCTTTTACAATGTTTTCTTTCTTTGCCACAACAATCGTGCCTCTCTTGCTCGAAACACATATGAACCCTCTGGCCGGACCATGAACGACAATACTCTGTGTTCTCTGAACGATAAGGACTTGTCGTCGCTTAGTCCTAATCTCGACATCACGATAGATGACGGATCTCCAAACAGTGAACAACTACTTGAGGTTGAGGATGACGGCAATGGGCTTGAGAATGACTGTGGTCAATTATTTGATATTGATGGAAGTGAACACGAAATTGGGAGGGATGAAACAACAGTAGTTGATAATCTTAGTGGAGAATCTCTAGGGAAAGACTACCCCCCACCAGTTGTGGGAATGGAGTTTGATACTTATGATGATGCCTACAACTATTACAATAGCTATGCCAAGGAAATTGGATTTGCTATTCGTGTTAAATCTTCGTGGACCAAACGTAACAGCAAAGAGAAGCGTGGTGCTGTGCTGTGTTGCAACTGTGAGGGTTTTAAAACAATTAAAGAAGCAAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAGCATGTGGAGGGTCGATGAAGTCAAGCTTGAGCATAACCATTCTTTTGATCCTGAGAGAGCACAAAACTCTAAATCCCATAAGAAGATTGACACTGGGGCCAAAAGAAAAGTTGAGCCAACTGTAGATGTTGAAGTACGAACAATCAAGTTATACCGAATGCCAGTTGTAGATGCATCAGGTTATGGAAGCTCAAATTCTAATGAAGGAGGAAGTAGCAACAACATTAATTTTTCCAGGCGTTTGAAACTTAAAAAAGGTGATCCAGAACTTATTTCAAATTACTTCTGCCGCAGTCAACTAATGAATCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGAAACATATTTTGGATTGACTCTAGATCTAGGGCTGCATATGGTTATTTTGGTGATGTGGTTGCATTTGACTCAACATGTTTGTCAAACAATTATGAGATCCCACTTGTTGCATTTGTTGGTGTTAATCACCATGGGCAATCTATTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACATATATGTGGTTATTTAGGGCATGGCTTACATGTATGTCTGGTCGCCCTCCACAAACTATGATTACAAACCAGTGCAAAACCATGCAAAGTGCAATAGCAGAGGTTTTCCCAAGAGCTCACCATAGAATTTGTCTATCACAAGTCATGCAGAGCATTCTTGGATATTTTGTGCAATTTCAGGATTATGAGGCATTTCAGACGGCGCTGACTAAAGTGATGTTTGACTCTAAAACAGTAGATGAATTTGAAAGGGATTGGGATGAACTGACCCAGCATTTTGGAATAAGAAGCCATGAAAAGCTTCAAACCTTGCATGAGGAACGAGAGCATTGGGCTCCAGTTTACTCCAAGGACACATTTTTTGCTGGAATTTCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAGTTAGTTCTGCAAAAAAAGCATAAAACTGAAGCTCTTGATGATTATGAGTCATGCAATTCAATCCCATTACTGAAGACAAGATGCTACTATGAGCTGCAGCTCTCTAGATTGTATACAAATACAATATTCAGGAAGTTCCAAGATGAGGTGGTGATGATGTCCTCTTGTTTCAGCGTCACACAAATTCAAACAAATGGGTCTATAGTGACGTACATGGTAAAAGAACCTTTAGGGGAAGAACCTGCAAGAGATGCTAGGCAGTTTGATGTCATGTATGATAAAGCTGGAGCAGAAGTACGCTGCATTTGTAATTGCTTTAACTTCAAAGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAATATATTTTGTCAAGATGGAGGAAGGATTTTAAGCGATTGTATGTACCTCATCTCAGTTCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCTATGCAAGTTGTTGAAGAAGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAAGCATTTAAAGAGTCTTTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA 4224 0.3951 MEETSVCCEQLPDGECIEVRKEEDGALIELDCQNGFSEERKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLMDSQRWRILEVTSEHNHMLGAKIHKSVKKMGTGTKRKTLPSSDAEAQTIKLYRALVIDAGGSGNSNFSARDDITFPEFSNKLNLKKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWVDARSRAACGYFCDVIYFDNTYLSNKYEIPLVAFVGINHHGQSVLLGCGLLAGETTESYRWLFTAWVTCMSGRSPQTIITDRCKALQSAIVEVFPRAQHRFGLSLIMKKVPEKLGGLHNYDAIRKALIKAVYETLKVIEFETAWGFMIQRFGVSDHEWLRSLYEDRVRWAPVYLKDTFFAGMSAARPSETISPFFDRYVHKQTPLKEFLDKYELALHKKHKEESFADIESRSSSPLLKTRCSFELQLSRLYTREIFMKFQFEVEEMYSCFGTTQLHVDGPIIIFLVKERVLIDGNRREIRDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPYKYILSRWKKDYKRLYVPDHSSGSAEDTDRIQWSSQLFRSALQVVEEGIISLDHYNVALQVFEKSLSKVHDVEQRQDAVLLWSFYNVFFLCHNNRASLARNTYEPSGRTMNDNTLCSLNDKDLSSLSPNLDITIDDGSPNSEQLLEVEDDGNGLENDCGQLFDIDGSEHEIGRDETTVVDNLSGESLGKDYPPPVVGMEFDTYDDAYNYYNSYAKEIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEANSHRKETRTGCLAMIRLRLVESSMWRVDEVKLEHNHSFDPERAQNSKSHKKIDTGAKRKVEPTVDVEVRTIKLYRMPVVDASGYGSSNSNEGGSSNNINFSRRLKLKKGDPELISNYFCRSQLMNPNFFYVMDLNDDGQLRNIFWIDSRSRAAYGYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGQSILLGCGLLADETFETYMWLFRAWLTCMSGRPPQTMITNQCKTMQSAIAEVFPRAHHRICLSQVMQSILGYFVQFQDYEAFQTALTKVMFDSKTVDEFERDWDELTQHFGIRSHEKLQTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVLQKKHKTEALDDYESCNSIPLLKTRCYYELQLSRLYTNTIFRKFQDEVVMMSSCFSVTQIQTNGSIVTYMVKEPLGEEPARDARQFDVMYDKAGAEVRCICNCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSSDNVDISNPVQCFDHLYKRAMQVVEEGMISQDHYMVSWQAFKESLNKIRLVADKIE 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1233g00006 1407 ProSiteProfiles Zinc finger SWIM-type profile. 1289 1325 IPR007527 GO:0008270
Gabi1233g00006 1407 MobiDBLite consensus disorder prediction 879 901 - -
Gabi1233g00006 1407 Pfam MULE transposase domain 262 356 IPR018289 -
Gabi1233g00006 1407 Pfam MULE transposase domain 1003 1096 IPR018289 -
Gabi1233g00006 1407 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Gabi1233g00006 1407 Pfam SWIM zinc finger 536 581 IPR007527 GO:0008270
Gabi1233g00006 1407 Pfam SWIM zinc finger 1300 1318 IPR007527 GO:0008270
Gabi1233g00006 1407 SMART 26again6 560 587 IPR006564 GO:0008270
Gabi1233g00006 1407 SMART 26again6 1300 1327 IPR006564 GO:0008270
Gabi1233g00006 1407 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 774 1400 IPR031052 GO:0006355
Gabi1233g00006 1407 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Gabi1233g00006 1407 Pfam FAR1 DNA-binding domain 798 882 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1233g00006 Gabi-Chr1233 60673 70551 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi1233g00006 MULE 3.1e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1233g00006 K17604 - gmx:100796448 2499.16